Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AP005019.3-201ENST00000620418 560 ntBASIC4.31□□□□□ -1.72
TRIM56Q9BRZ2 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM56Q9BRZ2 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.31□□□□□ -1.72
TRIM56Q9BRZ2 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM56Q9BRZ2 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
TRIM56Q9BRZ2 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.31□□□□□ -1.72
TRIM56Q9BRZ2 CUL1P1-201ENST00000509510 2425 ntBASIC4.31□□□□□ -1.72
TRIM56Q9BRZ2 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 RNA5SP175-201ENST00000364275 119 ntBASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 RPS4XP3-201ENST00000398541 413 ntBASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 AC011742.1-201ENST00000431448 434 ntBASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 RN7SL812P-201ENST00000493791 279 ntBASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 RNU1-61P-201ENST00000516107 151 ntBASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 RNU2-58P-201ENST00000516403 183 ntBASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 CR383656.8-201ENST00000549046 145 ntBASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 AL020997.2-201ENST00000602607 184 ntBASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 BRDTP1-201ENST00000605735 677 ntBASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 AC132825.6-201ENST00000638861 357 ntBASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TRIM56Q9BRZ2 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 Y_RNA.76-201ENST00000362931 109 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 RNU6-898P-201ENST00000365627 104 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 RNU6-142P-201ENST00000384019 107 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 RNU6-541P-201ENST00000384709 110 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 RNU6-21P-201ENST00000384710 107 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 RNA5SP239-201ENST00000410218 129 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 RNA5SP44-201ENST00000410446 133 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 Y_RNA.626-201ENST00000411288 95 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 MRPL42P6-201ENST00000486397 371 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 RPL30P1-201ENST00000488676 339 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 AC087441.2-201ENST00000529141 262 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 AK6P2-201ENST00000549020 471 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 AC113403.1-201ENST00000604910 193 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 AP001486.2-201ENST00000561652 5113 ntBASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
TRIM56Q9BRZ2 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 SNORA25.1-201ENST00000362326 128 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 RNU6-1020P-201ENST00000363684 107 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 RNU6-514P-201ENST00000384208 107 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 RNU6-318P-201ENST00000384283 103 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 SNORD12B-201ENST00000410433 91 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 AL356387.2-201ENST00000422272 243 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 AL157831.1-201ENST00000426134 473 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 MTCO1P5-201ENST00000433573 344 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 AC087477.1-201ENST00000465747 340 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 AP000870.1-201ENST00000472927 406 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 RPS4XP13-201ENST00000483219 789 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 AKIRIN2P1-201ENST00000505898 352 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 RN7SKP289-201ENST00000517244 295 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 AC072026.1-201ENST00000605023 201 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 MIR4727-201ENST00000622232 55 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 MIR6830-201ENST00000636015 70 ntBASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.28□□□□□ -1.72
TRIM56Q9BRZ2 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
TRIM56Q9BRZ2 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
TRIM56Q9BRZ2 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 175.7 ms