Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RNU5B-4P-201ENST00000363508 111 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 RNU6-112P-201ENST00000363599 104 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 RNU6-1187P-201ENST00000364771 110 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC1.03□□□□□ -2.24
CCDC42Q96M95 SNORA70.7-201ENST00000384159 133 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 MTND3P20-201ENST00000407663 186 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.03□□□□□ -2.24
CCDC42Q96M95 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.03□□□□□ -2.24
CCDC42Q96M95 BTF3P4-201ENST00000418852 495 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 USP9YP17-201ENST00000444617 696 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.03□□□□□ -2.24
CCDC42Q96M95 snoU13.23-201ENST00000458863 104 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 snoU13.14-201ENST00000459372 104 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC1.03□□□□□ -2.24
CCDC42Q96M95 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
CCDC42Q96M95 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.03□□□□□ -2.24
CCDC42Q96M95 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.03□□□□□ -2.24
CCDC42Q96M95 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.03□□□□□ -2.24
CCDC42Q96M95 AC015712.3-201ENST00000559380 164 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.03□□□□□ -2.24
CCDC42Q96M95 AC005786.1-201ENST00000588553 154 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 MTND5P9-201ENST00000503854 1755 ntBASIC1.03□□□□□ -2.24
CCDC42Q96M95 Y_RNA.40-201ENST00000362645 93 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 RNU6-701P-201ENST00000384059 107 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 Y_RNA.534-201ENST00000384599 112 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
CCDC42Q96M95 RPL23AP36-201ENST00000413895 458 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 AC016831.2-201ENST00000417179 352 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 AC083875.1-201ENST00000419509 405 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC42Q96M95 AL591704.1-201ENST00000432574 275 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.02□□□□□ -2.25
CCDC42Q96M95 JTBP1-201ENST00000441314 247 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 AP000542.1-201ENST00000448473 371 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC1.02□□□□□ -2.25
CCDC42Q96M95 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.02□□□□□ -2.25
CCDC42Q96M95 RPL26P26-201ENST00000480251 434 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 ICE2P2-201ENST00000483823 2787 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 AP001025.1-201ENST00000486139 332 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 MTND1P36-201ENST00000522384 936 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC42Q96M95 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC42Q96M95 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC42Q96M95 AP000860.1-201ENST00000605250 559 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 AC025754.2-201ENST00000606491 432 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 AL355802.3-201ENST00000607571 545 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 MIR8063-201ENST00000621930 81 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 AC130454.1-201ENST00000622948 401 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 AL136313.1-201ENST00000624804 202 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 MIR1248-201ENST00000629190 106 ntBASIC1.02□□□□□ -2.25
CCDC42Q96M95 RNU2-23P-201ENST00000410545 195 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 AL359704.1-201ENST00000411586 781 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 AC004965.1-201ENST00000413033 213 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC42Q96M95 CST2P1-201ENST00000425770 87 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 UBE2V1P8-201ENST00000437166 265 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 DYNLT3P2-201ENST00000442517 295 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC42Q96M95 MTND2P4-201ENST00000445034 1004 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 AL606517.1-201ENST00000446914 387 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 RNU6-953P-201ENST00000459154 107 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC42Q96M95 HMGN1P13-201ENST00000505795 138 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC1.01□□□□□ -2.25
CCDC42Q96M95 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.01□□□□□ -2.25
CCDC42Q96M95 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC1.01□□□□□ -2.25
CCDC42Q96M95 RNU6-991P-201ENST00000516168 107 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 RNU6-1315P-201ENST00000517187 99 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 CR383656.8-201ENST00000549046 145 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 AC025678.1-201ENST00000567861 338 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 AC007363.1-201ENST00000604736 620 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 AC104985.3-201ENST00000623479 597 ntBASIC1.01□□□□□ -2.25
CCDC42Q96M95 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
CCDC42Q96M95 SNORD33-201ENST00000362761 85 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 RNU6-942P-201ENST00000363002 107 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 RNU6-777P-201ENST00000364265 104 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 RNU6-1025P-201ENST00000410629 104 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 MTCO1P17-201ENST00000411522 491 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC1□□□□□ -2.25
CCDC42Q96M95 CBX3P6-201ENST00000430257 527 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 AL353752.1-201ENST00000454946 260 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 RPL39P28-201ENST00000465655 155 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 HMGB1P30-201ENST00000492455 606 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 AL133373.1-201ENST00000497098 94 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC1□□□□□ -2.25
CCDC42Q96M95 AC079140.2-201ENST00000506193 142 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1□□□□□ -2.25
CCDC42Q96M95 AL356057.1-201ENST00000533798 831 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1□□□□□ -2.25
CCDC42Q96M95 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1□□□□□ -2.25
CCDC42Q96M95 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC1□□□□□ -2.25
CCDC42Q96M95 VN1R80P-201ENST00000597126 338 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 AL590240.4-201ENST00000616908 390 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 5S_rRNA.11-201ENST00000618635 84 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 AC123767.1-202ENST00000620407 817 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 AC068205.3-201ENST00000636385 468 ntBASIC1□□□□□ -2.25
CCDC42Q96M95 AL391987.6-201ENST00000305671 199 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 RNA5SP327-201ENST00000362494 101 ntBASIC0.99□□□□□ -2.25
CCDC42Q96M95 RNU6-296P-201ENST00000384608 107 ntBASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms