Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.34□□□□□ -2.03
CDX1P47902 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CDX1P47902 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.03
CDX1P47902 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.34□□□□□ -2.03
CDX1P47902 RNU6-1010P-201ENST00000362757 107 ntBASIC2.34□□□□□ -2.03
CDX1P47902 DEFA7P-201ENST00000382676 285 ntBASIC2.34□□□□□ -2.03
CDX1P47902 RNU1-57P-201ENST00000384491 166 ntBASIC2.34□□□□□ -2.03
CDX1P47902 SNORA44-201ENST00000384584 132 ntBASIC2.34□□□□□ -2.03
CDX1P47902 RNA5SP219-201ENST00000390940 113 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AL590002.1-201ENST00000406554 418 ntBASIC2.34□□□□□ -2.03
CDX1P47902 RNU6-1245P-201ENST00000411130 106 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.34□□□□□ -2.03
CDX1P47902 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.34□□□□□ -2.03
CDX1P47902 CYCSP48-201ENST00000417124 323 ntBASIC2.34□□□□□ -2.03
CDX1P47902 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
CDX1P47902 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.34□□□□□ -2.03
CDX1P47902 EIF4EP4-201ENST00000424916 578 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.34□□□□□ -2.03
CDX1P47902 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.34□□□□□ -2.03
CDX1P47902 AC090515.1-201ENST00000465295 476 ntBASIC2.34□□□□□ -2.03
CDX1P47902 DYNLL1P5-201ENST00000467158 270 ntBASIC2.34□□□□□ -2.03
CDX1P47902 RPL30P12-201ENST00000474666 353 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AC103975.1-201ENST00000482506 483 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AP001025.1-201ENST00000486139 332 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AC083906.5-201ENST00000503722 328 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AC019235.1-201ENST00000503847 207 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.34□□□□□ -2.03
CDX1P47902 Y_RNA.704-201ENST00000516851 102 ntBASIC2.34□□□□□ -2.03
CDX1P47902 SNORA25.17-201ENST00000517184 124 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AC090136.1-201ENST00000520009 240 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AC022880.1-201ENST00000534017 973 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.34□□□□□ -2.03
CDX1P47902 AL512310.1-201ENST00000548639 172 ntBASIC2.34□□□□□ -2.03
CDX1P47902 HMGB1P33-201ENST00000563485 527 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.34□□□□□ -2.03
CDX1P47902 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.34□□□□□ -2.03
CDX1P47902 AF250324.2-201ENST00000608299 610 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AC092954.2-201ENST00000609103 430 ntBASIC2.34□□□□□ -2.03
CDX1P47902 AC104237.2-201ENST00000612456 443 ntBASIC2.34□□□□□ -2.03
CDX1P47902 HMGB1P24-202ENST00000615653 685 ntBASIC2.34□□□□□ -2.03
CDX1P47902 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
CDX1P47902 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.34□□□□□ -2.04
CDX1P47902 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
CDX1P47902 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.33□□□□□ -2.04
CDX1P47902 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CDX1P47902 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CDX1P47902 RNA5SP393-201ENST00000363423 117 ntBASIC2.33□□□□□ -2.04
CDX1P47902 RNA5SP125-201ENST00000364843 120 ntBASIC2.33□□□□□ -2.04
CDX1P47902 RNU6-483P-201ENST00000384088 108 ntBASIC2.33□□□□□ -2.04
CDX1P47902 RNU6-622P-201ENST00000384272 103 ntBASIC2.33□□□□□ -2.04
CDX1P47902 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
CDX1P47902 RNU6-780P-201ENST00000391030 104 ntBASIC2.33□□□□□ -2.04
CDX1P47902 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.33□□□□□ -2.04
CDX1P47902 RNU2-63P-201ENST00000410792 194 ntBASIC2.33□□□□□ -2.04
CDX1P47902 SNORD56-201ENST00000413522 71 ntBASIC2.33□□□□□ -2.04
CDX1P47902 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.33□□□□□ -2.04
CDX1P47902 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
CDX1P47902 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CDX1P47902 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.33□□□□□ -2.04
CDX1P47902 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.33□□□□□ -2.04
CDX1P47902 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.33□□□□□ -2.04
CDX1P47902 AL031274.1-201ENST00000450334 232 ntBASIC2.33□□□□□ -2.04
CDX1P47902 TPTE2P5-203ENST00000458118 728 ntBASIC2.33□□□□□ -2.04
CDX1P47902 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.33□□□□□ -2.04
CDX1P47902 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.33□□□□□ -2.04
CDX1P47902 CCDC34P1-201ENST00000507441 517 ntBASIC2.33□□□□□ -2.04
CDX1P47902 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CDX1P47902 Y_RNA.655-201ENST00000515919 96 ntBASIC2.33□□□□□ -2.04
CDX1P47902 RNU6-1281P-201ENST00000516223 105 ntBASIC2.33□□□□□ -2.04
CDX1P47902 RNU6-1038P-201ENST00000516516 104 ntBASIC2.33□□□□□ -2.04
CDX1P47902 AC109479.2-201ENST00000517842 174 ntBASIC2.33□□□□□ -2.04
CDX1P47902 AC109329.1-201ENST00000518744 317 ntBASIC2.33□□□□□ -2.04
CDX1P47902 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.33□□□□□ -2.04
CDX1P47902 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.33□□□□□ -2.04
CDX1P47902 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.33□□□□□ -2.04
CDX1P47902 LARP7P3-201ENST00000579888 337 ntBASIC2.33□□□□□ -2.04
CDX1P47902 AC090897.2-201ENST00000581715 130 ntBASIC2.33□□□□□ -2.04
CDX1P47902 MIR4658-201ENST00000584344 65 ntBASIC2.33□□□□□ -2.04
CDX1P47902 MIR4424-201ENST00000585257 86 ntBASIC2.33□□□□□ -2.04
CDX1P47902 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.33□□□□□ -2.04
CDX1P47902 APOOP1-201ENST00000604695 592 ntBASIC2.33□□□□□ -2.04
CDX1P47902 AC123912.5-201ENST00000605470 343 ntBASIC2.33□□□□□ -2.04
CDX1P47902 AC007792.1-201ENST00000623023 402 ntBASIC2.33□□□□□ -2.04
CDX1P47902 AC097372.5-201ENST00000623665 376 ntBASIC2.33□□□□□ -2.04
CDX1P47902 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.33□□□□□ -2.04
CDX1P47902 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CDX1P47902 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CDX1P47902 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.32□□□□□ -2.04
CDX1P47902 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.32□□□□□ -2.04
CDX1P47902 MIR6073-201ENST00000352083 89 ntBASIC2.32□□□□□ -2.04
CDX1P47902 RNU6-529P-201ENST00000363383 104 ntBASIC2.32□□□□□ -2.04
CDX1P47902 MIR186-201ENST00000384988 86 ntBASIC2.32□□□□□ -2.04
CDX1P47902 MIR634-201ENST00000385208 97 ntBASIC2.32□□□□□ -2.04
CDX1P47902 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.32□□□□□ -2.04
CDX1P47902 COTL1P1-201ENST00000422309 375 ntBASIC2.32□□□□□ -2.04
CDX1P47902 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.32□□□□□ -2.04
CDX1P47902 MTND3P21-201ENST00000433774 331 ntBASIC2.32□□□□□ -2.04
CDX1P47902 SEPT14P3-201ENST00000439401 183 ntBASIC2.32□□□□□ -2.04
CDX1P47902 AC124916.1-201ENST00000444020 547 ntBASIC2.32□□□□□ -2.04
CDX1P47902 AL732372.2-207ENST00000445840 183 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 132.3 ms