Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC005046.1-201ENST00000608515 625 ntBASIC4.49□□□□□ -1.69
LIG1P18858 AC004792.1-201ENST00000614523 137 ntBASIC4.49□□□□□ -1.69
LIG1P18858 MIR6875-201ENST00000617506 72 ntBASIC4.49□□□□□ -1.69
LIG1P18858 U7.8-201ENST00000619968 63 ntBASIC4.49□□□□□ -1.69
LIG1P18858 LINC02555-201ENST00000563933 1951 ntBASIC4.49□□□□□ -1.69
LIG1P18858 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIG1P18858 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIG1P18858 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIG1P18858 RNY3P4-201ENST00000384428 101 ntBASIC4.48□□□□□ -1.69
LIG1P18858 RPL21P75-201ENST00000396599 483 ntBASIC4.48□□□□□ -1.69
LIG1P18858 RPL21P28-201ENST00000401418 483 ntBASIC4.48□□□□□ -1.69
LIG1P18858 RPS29P13-201ENST00000402041 169 ntBASIC4.48□□□□□ -1.69
LIG1P18858 AL590556.1-201ENST00000423231 483 ntBASIC4.48□□□□□ -1.69
LIG1P18858 TOMM20P4-201ENST00000427861 435 ntBASIC4.48□□□□□ -1.69
LIG1P18858 ARF4P2-201ENST00000430209 526 ntBASIC4.48□□□□□ -1.69
LIG1P18858 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.48□□□□□ -1.69
LIG1P18858 RPL21P11-201ENST00000461458 483 ntBASIC4.48□□□□□ -1.69
LIG1P18858 RPL21P39-201ENST00000463605 483 ntBASIC4.48□□□□□ -1.69
LIG1P18858 AC132942.1-201ENST00000486753 483 ntBASIC4.48□□□□□ -1.69
LIG1P18858 AC093591.1-201ENST00000491435 481 ntBASIC4.48□□□□□ -1.69
LIG1P18858 RPL21P16-201ENST00000495531 483 ntBASIC4.48□□□□□ -1.69
LIG1P18858 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.48□□□□□ -1.69
LIG1P18858 AK3P2-201ENST00000507976 429 ntBASIC4.48□□□□□ -1.69
LIG1P18858 AC025755.1-201ENST00000521306 278 ntBASIC4.48□□□□□ -1.69
LIG1P18858 AP002770.2-201ENST00000543613 532 ntBASIC4.48□□□□□ -1.69
LIG1P18858 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.48□□□□□ -1.69
LIG1P18858 MIR3921-201ENST00000577308 85 ntBASIC4.48□□□□□ -1.69
LIG1P18858 MIR4300-201ENST00000581016 96 ntBASIC4.48□□□□□ -1.69
LIG1P18858 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LIG1P18858 MIR376A1-201ENST00000616574 68 ntBASIC4.48□□□□□ -1.69
LIG1P18858 U6.92-201ENST00000636464 89 ntBASIC4.48□□□□□ -1.69
LIG1P18858 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIG1P18858 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIG1P18858 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIG1P18858 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIG1P18858 AC006504.1-201ENST00000562493 3666 ntBASIC4.48□□□□□ -1.69
LIG1P18858 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.47□□□□□ -1.69
LIG1P18858 SNORA60-201ENST00000362396 134 ntBASIC4.47□□□□□ -1.69
LIG1P18858 Y_RNA.245-201ENST00000364493 95 ntBASIC4.47□□□□□ -1.69
LIG1P18858 Y_RNA.297-201ENST00000364950 91 ntBASIC4.47□□□□□ -1.69
LIG1P18858 MIR10A-201ENST00000385043 110 ntBASIC4.47□□□□□ -1.69
LIG1P18858 AP000275.1-201ENST00000411943 390 ntBASIC4.47□□□□□ -1.69
LIG1P18858 NDUFB4P7-201ENST00000423198 363 ntBASIC4.47□□□□□ -1.69
LIG1P18858 BX679664.1-201ENST00000434429 253 ntBASIC4.47□□□□□ -1.69
LIG1P18858 RPL23AP22-201ENST00000437556 453 ntBASIC4.47□□□□□ -1.69
LIG1P18858 AC104332.1-201ENST00000440471 797 ntBASIC4.47□□□□□ -1.69
LIG1P18858 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.47□□□□□ -1.69
LIG1P18858 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.47□□□□□ -1.69
LIG1P18858 RNU6-1338P-201ENST00000516328 91 ntBASIC4.47□□□□□ -1.69
LIG1P18858 DEFB108E-201ENST00000524692 240 ntBASIC4.47□□□□□ -1.69
LIG1P18858 AC007458.1-201ENST00000542812 373 ntBASIC4.47□□□□□ -1.69
LIG1P18858 AC093023.1-201ENST00000547375 507 ntBASIC4.47□□□□□ -1.69
LIG1P18858 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.47□□□□□ -1.69
LIG1P18858 AC005476.1-201ENST00000554427 397 ntBASIC4.47□□□□□ -1.69
LIG1P18858 AC090877.1-201ENST00000561418 344 ntBASIC4.47□□□□□ -1.69
LIG1P18858 AC120057.2-201ENST00000571520 271 ntBASIC4.47□□□□□ -1.69
LIG1P18858 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.47□□□□□ -1.69
LIG1P18858 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.47□□□□□ -1.69
LIG1P18858 BRDTP1-201ENST00000605735 677 ntBASIC4.47□□□□□ -1.69
LIG1P18858 AC091903.1-201ENST00000624322 454 ntBASIC4.47□□□□□ -1.69
LIG1P18858 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.47□□□□□ -1.69
LIG1P18858 AL450472.1-202ENST00000637286 180 ntBASIC4.47□□□□□ -1.69
LIG1P18858 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.47□□□□□ -1.69
LIG1P18858 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIG1P18858 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIG1P18858 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIG1P18858 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
LIG1P18858 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
LIG1P18858 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
LIG1P18858 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.69
LIG1P18858 AL157777.2-201ENST00000258070 137 ntBASIC4.46□□□□□ -1.7
LIG1P18858 RNU6-227P-201ENST00000362865 103 ntBASIC4.46□□□□□ -1.7
LIG1P18858 Y_RNA.274-201ENST00000364714 101 ntBASIC4.46□□□□□ -1.7
LIG1P18858 Y_RNA.358-201ENST00000365491 99 ntBASIC4.46□□□□□ -1.7
LIG1P18858 SNORA40C-201ENST00000391285 128 ntBASIC4.46□□□□□ -1.7
LIG1P18858 AC091286.1-201ENST00000431233 461 ntBASIC4.46□□□□□ -1.7
LIG1P18858 MTCO3P29-201ENST00000432119 779 ntBASIC4.46□□□□□ -1.7
LIG1P18858 SSXP4-201ENST00000451349 245 ntBASIC4.46□□□□□ -1.7
LIG1P18858 AL138752.1-201ENST00000452964 351 ntBASIC4.46□□□□□ -1.7
LIG1P18858 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.46□□□□□ -1.7
LIG1P18858 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
LIG1P18858 AC136932.1-201ENST00000574771 208 ntBASIC4.46□□□□□ -1.7
LIG1P18858 MIR5047-201ENST00000579212 100 ntBASIC4.46□□□□□ -1.7
LIG1P18858 AL606490.9-201ENST00000603331 271 ntBASIC4.46□□□□□ -1.7
LIG1P18858 CENPF-206ENST00000614578 528 ntTSL 5 BASIC4.46□□□□□ -1.7
LIG1P18858 MIR6500-201ENST00000622700 86 ntBASIC4.46□□□□□ -1.7
LIG1P18858 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.46□□□□□ -1.7
LIG1P18858 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LIG1P18858 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.7
LIG1P18858 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
LIG1P18858 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
LIG1P18858 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.45□□□□□ -1.7
LIG1P18858 TNPO1P3-201ENST00000436471 2662 ntBASIC4.45□□□□□ -1.7
LIG1P18858 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
LIG1P18858 Y_RNA.150-201ENST00000363562 102 ntBASIC4.45□□□□□ -1.7
LIG1P18858 Y_RNA.270-201ENST00000364693 104 ntBASIC4.45□□□□□ -1.7
LIG1P18858 Y_RNA.405-201ENST00000383979 100 ntBASIC4.45□□□□□ -1.7
LIG1P18858 Y_RNA.451-201ENST00000384200 100 ntBASIC4.45□□□□□ -1.7
LIG1P18858 Y_RNA.524-201ENST00000384564 100 ntBASIC4.45□□□□□ -1.7
LIG1P18858 Y_RNA.561-201ENST00000384694 100 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms