Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC145285.3-201ENST00000564603 959 ntBASIC28.81■■■□□ 2.2
COL17A1Q9UMD9 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC28.81■■■□□ 2.2
COL17A1Q9UMD9 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
COL17A1Q9UMD9 FAM215A-202ENST00000632077 792 ntBASIC28.81■■■□□ 2.2
COL17A1Q9UMD9 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
COL17A1Q9UMD9 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
COL17A1Q9UMD9 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC28.8■■■□□ 2.2
COL17A1Q9UMD9 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC28.8■■■□□ 2.2
COL17A1Q9UMD9 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC28.8■■■□□ 2.2
COL17A1Q9UMD9 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
COL17A1Q9UMD9 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
COL17A1Q9UMD9 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
COL17A1Q9UMD9 HNRNPDP1-201ENST00000439535 754 ntBASIC28.8■■■□□ 2.2
COL17A1Q9UMD9 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC28.8■■■□□ 2.2
COL17A1Q9UMD9 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
COL17A1Q9UMD9 IGHV3-41-201ENST00000613121 348 ntBASIC28.8■■■□□ 2.2
COL17A1Q9UMD9 ZNF259P1-201ENST00000407656 1365 ntBASIC28.8■■■□□ 2.2
COL17A1Q9UMD9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
COL17A1Q9UMD9 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
COL17A1Q9UMD9 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC28.79■■■□□ 2.2
COL17A1Q9UMD9 NMU-202ENST00000505262 693 ntTSL 3 BASIC28.79■■■□□ 2.2
COL17A1Q9UMD9 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC28.79■■■□□ 2.2
COL17A1Q9UMD9 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC28.79■■■□□ 2.2
COL17A1Q9UMD9 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC28.79■■■□□ 2.2
COL17A1Q9UMD9 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
COL17A1Q9UMD9 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC28.79■■■□□ 2.2
COL17A1Q9UMD9 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
COL17A1Q9UMD9 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
COL17A1Q9UMD9 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC28.79■■■□□ 2.2
COL17A1Q9UMD9 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
COL17A1Q9UMD9 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
COL17A1Q9UMD9 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 AF106564.1-201ENST00000607058 2553 ntBASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC28.77■■■□□ 2.2
COL17A1Q9UMD9 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
COL17A1Q9UMD9 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
COL17A1Q9UMD9 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
COL17A1Q9UMD9 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
COL17A1Q9UMD9 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC28.76■■■□□ 2.19
COL17A1Q9UMD9 RPS8P6-201ENST00000426177 609 ntBASIC28.76■■■□□ 2.19
COL17A1Q9UMD9 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC28.76■■■□□ 2.19
COL17A1Q9UMD9 AC004967.1-201ENST00000453589 447 ntBASIC28.76■■■□□ 2.19
COL17A1Q9UMD9 AC093909.1-201ENST00000504731 1122 ntBASIC28.76■■■□□ 2.19
COL17A1Q9UMD9 SART3-203ENST00000546611 1184 ntBASIC28.76■■■□□ 2.19
COL17A1Q9UMD9 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC28.76■■■□□ 2.19
COL17A1Q9UMD9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
COL17A1Q9UMD9 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
COL17A1Q9UMD9 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
COL17A1Q9UMD9 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC28.75■■■□□ 2.19
COL17A1Q9UMD9 SCARNA2-201ENST00000458748 420 ntBASIC28.75■■■□□ 2.19
COL17A1Q9UMD9 IGHV3-22-201ENST00000520721 359 ntBASIC28.75■■■□□ 2.19
COL17A1Q9UMD9 MIR3180-5-201ENST00000583743 153 ntBASIC28.75■■■□□ 2.19
COL17A1Q9UMD9 AL356488.2-201ENST00000602755 427 ntBASIC28.75■■■□□ 2.19
COL17A1Q9UMD9 PRKN-208ENST00000610470 531 ntTSL 2 BASIC28.75■■■□□ 2.19
COL17A1Q9UMD9 PRKN-209ENST00000612485 225 ntTSL 5 BASIC28.75■■■□□ 2.19
COL17A1Q9UMD9 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC28.75■■■□□ 2.19
COL17A1Q9UMD9 AC116407.3-201ENST00000623905 1129 ntBASIC28.75■■■□□ 2.19
COL17A1Q9UMD9 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC28.75■■■□□ 2.19
COL17A1Q9UMD9 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 YBX2P1-201ENST00000394192 760 ntBASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 GRAMD4P1-201ENST00000435181 1110 ntBASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 BNIP3P18-201ENST00000593976 575 ntBASIC28.74■■■□□ 2.19
COL17A1Q9UMD9 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms