Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 FAAHP1-202ENST00000446499 1238 ntBASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 MIR3180-1-201ENST00000580374 94 ntBASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 MIR3180-3-201ENST00000584616 94 ntBASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 AL121672.3-201ENST00000608644 468 ntBASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMD1Q9UGP4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMD1Q9UGP4 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMD1Q9UGP4 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.77■□□□□ 0.75
LIMD1Q9UGP4 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 AC034232.1-201ENST00000506026 1064 ntBASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 GPALPP1-207ENST00000611650 899 ntBASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMD1Q9UGP4 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms