Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC31.53■■■□□ 2.64
IFT140Q96RY7 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC31.53■■■□□ 2.64
IFT140Q96RY7 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
IFT140Q96RY7 AP005212.1-201ENST00000581547 1997 ntBASIC31.53■■■□□ 2.64
IFT140Q96RY7 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
IFT140Q96RY7 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
IFT140Q96RY7 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
IFT140Q96RY7 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC31.52■■■□□ 2.64
IFT140Q96RY7 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC31.52■■■□□ 2.64
IFT140Q96RY7 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC31.52■■■□□ 2.64
IFT140Q96RY7 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC31.52■■■□□ 2.64
IFT140Q96RY7 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
IFT140Q96RY7 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
IFT140Q96RY7 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
IFT140Q96RY7 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC31.52■■■□□ 2.64
IFT140Q96RY7 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
IFT140Q96RY7 BID-212ENST00000614949 1988 ntTSL 5 BASIC31.52■■■□□ 2.64
IFT140Q96RY7 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC31.52■■■□□ 2.64
IFT140Q96RY7 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC31.52■■■□□ 2.64
IFT140Q96RY7 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
IFT140Q96RY7 GAS2L1P1-201ENST00000420145 1480 ntBASIC31.52■■■□□ 2.64
IFT140Q96RY7 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
IFT140Q96RY7 MIR564-202ENST00000385049 94 ntBASIC31.52■■■□□ 2.64
IFT140Q96RY7 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC31.52■■■□□ 2.64
IFT140Q96RY7 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC31.52■■■□□ 2.64
IFT140Q96RY7 AC008608.2-201ENST00000606089 416 ntBASIC31.52■■■□□ 2.64
IFT140Q96RY7 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC31.51■■■□□ 2.64
IFT140Q96RY7 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.64
IFT140Q96RY7 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC31.51■■■□□ 2.63
IFT140Q96RY7 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.63
IFT140Q96RY7 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
IFT140Q96RY7 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC31.51■■■□□ 2.63
IFT140Q96RY7 WWC2-AS2-201ENST00000578387 2183 ntBASIC31.51■■■□□ 2.63
IFT140Q96RY7 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
IFT140Q96RY7 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
IFT140Q96RY7 AC145285.3-201ENST00000564603 959 ntBASIC31.51■■■□□ 2.63
IFT140Q96RY7 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC31.51■■■□□ 2.63
IFT140Q96RY7 AC124864.1-201ENST00000623408 392 ntBASIC31.51■■■□□ 2.63
IFT140Q96RY7 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC31.51■■■□□ 2.63
IFT140Q96RY7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC31.5■■■□□ 2.63
IFT140Q96RY7 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC31.5■■■□□ 2.63
IFT140Q96RY7 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC31.5■■■□□ 2.63
IFT140Q96RY7 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC31.5■■■□□ 2.63
IFT140Q96RY7 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC31.5■■■□□ 2.63
IFT140Q96RY7 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC31.5■■■□□ 2.63
IFT140Q96RY7 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
IFT140Q96RY7 GOLGA6L5P-202ENST00000515341 1828 ntBASIC31.49■■■□□ 2.63
IFT140Q96RY7 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC31.49■■■□□ 2.63
IFT140Q96RY7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC31.49■■■□□ 2.63
IFT140Q96RY7 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
IFT140Q96RY7 AC098831.1-202ENST00000438821 336 ntBASIC31.49■■■□□ 2.63
IFT140Q96RY7 GUSBP12-201ENST00000513727 720 ntBASIC31.49■■■□□ 2.63
IFT140Q96RY7 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC31.49■■■□□ 2.63
IFT140Q96RY7 PRKN-208ENST00000610470 531 ntTSL 2 BASIC31.49■■■□□ 2.63
IFT140Q96RY7 PRKN-209ENST00000612485 225 ntTSL 5 BASIC31.49■■■□□ 2.63
IFT140Q96RY7 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC31.49■■■□□ 2.63
IFT140Q96RY7 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
IFT140Q96RY7 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
IFT140Q96RY7 ZNF259P1-201ENST00000407656 1365 ntBASIC31.48■■■□□ 2.63
IFT140Q96RY7 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
IFT140Q96RY7 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC31.48■■■□□ 2.63
IFT140Q96RY7 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
IFT140Q96RY7 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
IFT140Q96RY7 URGCP-206ENST00000446958 365 ntTSL 2 BASIC31.48■■■□□ 2.63
IFT140Q96RY7 IRF8-202ENST00000562492 946 ntTSL 3 BASIC31.48■■■□□ 2.63
IFT140Q96RY7 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC31.48■■■□□ 2.63
IFT140Q96RY7 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC31.48■■■□□ 2.63
IFT140Q96RY7 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC31.48■■■□□ 2.63
IFT140Q96RY7 AP001160.2-201ENST00000596071 487 ntBASIC31.48■■■□□ 2.63
IFT140Q96RY7 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC31.48■■■□□ 2.63
IFT140Q96RY7 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
IFT140Q96RY7 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
IFT140Q96RY7 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
IFT140Q96RY7 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC31.48■■■□□ 2.63
IFT140Q96RY7 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC31.47■■■□□ 2.63
IFT140Q96RY7 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
IFT140Q96RY7 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
IFT140Q96RY7 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC31.47■■■□□ 2.63
IFT140Q96RY7 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC31.47■■■□□ 2.63
IFT140Q96RY7 POM121L3P-201ENST00000419331 1163 ntBASIC31.47■■■□□ 2.63
IFT140Q96RY7 AC027796.2-201ENST00000575326 344 ntBASIC31.47■■■□□ 2.63
IFT140Q96RY7 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC31.47■■■□□ 2.63
IFT140Q96RY7 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
IFT140Q96RY7 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
IFT140Q96RY7 FAM215A-202ENST00000632077 792 ntBASIC31.47■■■□□ 2.63
IFT140Q96RY7 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC31.47■■■□□ 2.63
IFT140Q96RY7 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
IFT140Q96RY7 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC31.47■■■□□ 2.63
IFT140Q96RY7 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
IFT140Q96RY7 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
IFT140Q96RY7 HES2-202ENST00000377836 507 ntTSL 2 BASIC31.46■■■□□ 2.63
IFT140Q96RY7 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC31.46■■■□□ 2.63
IFT140Q96RY7 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
IFT140Q96RY7 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC31.46■■■□□ 2.63
IFT140Q96RY7 ZNF815P-204ENST00000434898 1737 ntBASIC31.46■■■□□ 2.63
IFT140Q96RY7 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
IFT140Q96RY7 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
IFT140Q96RY7 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC31.46■■■□□ 2.63
IFT140Q96RY7 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
IFT140Q96RY7 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms