Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA1P55317 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA1P55317 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
FOXA1P55317 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.41■□□□□ 0.54
FOXA1P55317 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
FOXA1P55317 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.41■□□□□ 0.54
FOXA1P55317 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 KRT8P41-201ENST00000533985 1514 ntBASIC18.41■□□□□ 0.54
FOXA1P55317 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 RNA5SP413-201ENST00000516373 109 ntBASIC18.41■□□□□ 0.54
FOXA1P55317 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.41■□□□□ 0.54
FOXA1P55317 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.41■□□□□ 0.54
FOXA1P55317 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.41■□□□□ 0.54
FOXA1P55317 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.41■□□□□ 0.54
FOXA1P55317 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
FOXA1P55317 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.41■□□□□ 0.54
FOXA1P55317 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.41■□□□□ 0.54
FOXA1P55317 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
FOXA1P55317 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
FOXA1P55317 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.41■□□□□ 0.54
FOXA1P55317 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
FOXA1P55317 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
FOXA1P55317 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.4■□□□□ 0.54
FOXA1P55317 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.4■□□□□ 0.54
FOXA1P55317 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
FOXA1P55317 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.4■□□□□ 0.54
FOXA1P55317 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.4■□□□□ 0.54
FOXA1P55317 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 BICD1-207ENST00000551848 1962 ntBASIC18.4■□□□□ 0.54
FOXA1P55317 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA1P55317 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.4■□□□□ 0.54
FOXA1P55317 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
FOXA1P55317 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.4■□□□□ 0.54
FOXA1P55317 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
FOXA1P55317 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
FOXA1P55317 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
FOXA1P55317 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.39■□□□□ 0.54
FOXA1P55317 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
FOXA1P55317 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
FOXA1P55317 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.39■□□□□ 0.53
FOXA1P55317 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.39■□□□□ 0.53
FOXA1P55317 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA1P55317 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
FOXA1P55317 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
FOXA1P55317 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.39■□□□□ 0.53
FOXA1P55317 AC004264.1-201ENST00000608354 794 ntBASIC18.39■□□□□ 0.53
FOXA1P55317 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.39■□□□□ 0.53
FOXA1P55317 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA1P55317 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.39■□□□□ 0.53
FOXA1P55317 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA1P55317 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.39■□□□□ 0.53
FOXA1P55317 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.39■□□□□ 0.53
FOXA1P55317 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA1P55317 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.39■□□□□ 0.53
FOXA1P55317 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA1P55317 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.39■□□□□ 0.53
FOXA1P55317 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.39■□□□□ 0.53
FOXA1P55317 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.39■□□□□ 0.53
FOXA1P55317 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA1P55317 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA1P55317 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA1P55317 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA1P55317 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
FOXA1P55317 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA1P55317 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.38■□□□□ 0.53
FOXA1P55317 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
FOXA1P55317 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA1P55317 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.38■□□□□ 0.53
FOXA1P55317 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms