Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 RPSAP43-201ENST00000402237 625 ntBASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 MIR7706-201ENST00000613747 67 ntBASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
COL6A6A6NMZ7 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 VENTXP7-201ENST00000475503 772 ntBASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 EP400NL-214ENST00000641289 2402 ntBASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 AL035633.1-201ENST00000406139 838 ntBASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 GPAT2P1-201ENST00000444924 1672 ntBASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
COL6A6A6NMZ7 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 IGHV3-22-201ENST00000520721 359 ntBASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 MIR3917-201ENST00000580971 93 ntBASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 NSUN5P1-202ENST00000421140 1535 ntBASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 NSUN5P2-203ENST00000457352 1529 ntBASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 YBX2P1-201ENST00000394192 760 ntBASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COL6A6A6NMZ7 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms