Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AL023881.1-201ENST00000621088 301 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 AC112200.1-201ENST00000625015 234 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 MIR3529-201ENST00000637713 78 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 MAPK10-303ENST00000641324 3959 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 Y_RNA.75-201ENST00000362927 97 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 RNU1-132P-201ENST00000364300 164 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 RNA5SP22-201ENST00000365393 109 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 RNA5SP366-201ENST00000365454 123 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 Y_RNA.357-201ENST00000365487 109 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 RNU6-1168P-201ENST00000390831 104 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 RNU6-735P-201ENST00000410612 107 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 Y_RNA.629-201ENST00000411368 105 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 AC010095.1-201ENST00000443543 144 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 AC022795.1-201ENST00000473808 480 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 AC091167.1-201ENST00000492017 396 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 NACAP3-201ENST00000552100 481 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 snoU18.1-201ENST00000629629 71 ntBASIC4.57□□□□□ -1.68
USP3Q9Y6I4 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
USP3Q9Y6I4 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 AC006971.1-201ENST00000407916 4486 ntBASIC4.56□□□□□ -1.68
USP3Q9Y6I4 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 RNU6-1272P-201ENST00000362776 107 ntBASIC4.56□□□□□ -1.68
USP3Q9Y6I4 RNU4-17P-201ENST00000365598 141 ntBASIC4.56□□□□□ -1.68
USP3Q9Y6I4 MIR325-201ENST00000385260 98 ntBASIC4.56□□□□□ -1.68
USP3Q9Y6I4 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 AL157831.1-201ENST00000426134 473 ntBASIC4.56□□□□□ -1.68
USP3Q9Y6I4 AC244670.1-201ENST00000436879 112 ntBASIC4.56□□□□□ -1.68
USP3Q9Y6I4 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 AL356535.1-201ENST00000440335 398 ntBASIC4.56□□□□□ -1.68
USP3Q9Y6I4 RPL35AP15-201ENST00000468042 339 ntBASIC4.56□□□□□ -1.68
USP3Q9Y6I4 RPS27AP9-201ENST00000477681 438 ntBASIC4.56□□□□□ -1.68
USP3Q9Y6I4 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 AC018448.1-201ENST00000552843 316 ntBASIC4.56□□□□□ -1.68
USP3Q9Y6I4 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 AC000123.3-201ENST00000624029 4975 ntBASIC4.56□□□□□ -1.68
USP3Q9Y6I4 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 FAM35BP-202ENST00000497389 3337 ntBASIC4.56□□□□□ -1.68
USP3Q9Y6I4 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
USP3Q9Y6I4 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 MTND5P35-201ENST00000557537 1720 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AP000542.2-201ENST00000623199 6179 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USP3Q9Y6I4 RNU4-80P-201ENST00000363200 141 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 Y_RNA.179-201ENST00000363844 90 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 RNU4-84P-201ENST00000364200 139 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 Y_RNA.238-201ENST00000364441 102 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 RNU6-487P-201ENST00000365430 104 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 RNU6-1130P-201ENST00000365434 107 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 MIR320B2-201ENST00000408479 138 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AL160275.2-201ENST00000412010 394 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC009237.10-201ENST00000414112 510 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC012306.1-201ENST00000423267 114 ntBASIC4.55□□□□□ -1.68
USP3Q9Y6I4 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms