Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AP003484.1-201ENST00000530974 250 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 MTCO2P15-201ENST00000532655 656 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.84□□□□□ -2.27
USP54Q70EL1 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC0.84□□□□□ -2.27
USP54Q70EL1 CYP2C61P-201ENST00000604072 290 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 AC005332.6-201ENST00000613178 446 ntBASIC0.84□□□□□ -2.27
USP54Q70EL1 Y_RNA.25-201ENST00000362528 102 ntBASIC0.84□□□□□ -2.28
USP54Q70EL1 RNU6-839P-201ENST00000363347 108 ntBASIC0.84□□□□□ -2.28
USP54Q70EL1 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC0.84□□□□□ -2.28
USP54Q70EL1 RN7SKP200-201ENST00000410564 320 ntBASIC0.84□□□□□ -2.28
USP54Q70EL1 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.84□□□□□ -2.28
USP54Q70EL1 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC0.84□□□□□ -2.28
USP54Q70EL1 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.84□□□□□ -2.28
USP54Q70EL1 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.84□□□□□ -2.28
USP54Q70EL1 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.84□□□□□ -2.28
USP54Q70EL1 AC109927.2-201ENST00000506416 303 ntBASIC0.84□□□□□ -2.28
USP54Q70EL1 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
USP54Q70EL1 RNU6-1261P-201ENST00000517194 104 ntBASIC0.84□□□□□ -2.28
USP54Q70EL1 AC079598.5-201ENST00000547460 117 ntBASIC0.84□□□□□ -2.28
USP54Q70EL1 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC0.84□□□□□ -2.28
USP54Q70EL1 AC006270.3-201ENST00000605967 1036 ntBASIC0.84□□□□□ -2.28
USP54Q70EL1 AL355802.3-201ENST00000607571 545 ntBASIC0.84□□□□□ -2.28
USP54Q70EL1 AP000776.1-201ENST00000530032 1663 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 ZNF29P-201ENST00000225587 168 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 DLEU2_6.3-201ENST00000340052 136 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 SNORD115-3-201ENST00000363100 82 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 RNU6-650P-201ENST00000365658 111 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 RNU6-432P-201ENST00000384196 109 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 RNU6-360P-201ENST00000390944 104 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 RNU2-48P-201ENST00000410694 191 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 AC092634.6-201ENST00000418558 192 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.83□□□□□ -2.28
USP54Q70EL1 MTCO3P5-201ENST00000433620 714 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 MTND5P15-201ENST00000434246 349 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC0.83□□□□□ -2.28
USP54Q70EL1 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.83□□□□□ -2.28
USP54Q70EL1 MRPL42P4-201ENST00000453267 443 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 AC013267.1-201ENST00000458227 267 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 RNU7-140P-201ENST00000459546 60 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 AC099513.1-201ENST00000490423 301 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.83□□□□□ -2.28
USP54Q70EL1 SNORA48.9-201ENST00000516419 162 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 RNU6-902P-201ENST00000517212 91 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 AL450270.1-201ENST00000606160 391 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 AL078604.3-201ENST00000615580 211 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 DLEU2_6.2-201ENST00000620994 136 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 AC243829.3-201ENST00000622177 108 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 AC017037.3-201ENST00000625016 472 ntBASIC0.83□□□□□ -2.28
USP54Q70EL1 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
USP54Q70EL1 AC245060.5-201ENST00000610778 3293 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
USP54Q70EL1 RNU6-359P-201ENST00000365466 108 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 RNU6-549P-201ENST00000384433 107 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 RPL23AP32-201ENST00000395315 459 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
USP54Q70EL1 AL590084.2-201ENST00000401481 382 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 DNAJA1P2-201ENST00000421360 1197 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 GPM6BP2-201ENST00000432046 144 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 USP9YP22-201ENST00000438971 294 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 GPM6BP1-201ENST00000446387 144 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.82□□□□□ -2.28
USP54Q70EL1 snoU13.9-201ENST00000458927 103 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.82□□□□□ -2.28
USP54Q70EL1 CYCSP27-201ENST00000527643 293 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 OR5B19P-201ENST00000531766 928 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 AC005832.3-201ENST00000537929 631 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.82□□□□□ -2.28
USP54Q70EL1 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.82□□□□□ -2.28
USP54Q70EL1 AL121890.5-201ENST00000620848 304 ntBASIC0.82□□□□□ -2.28
USP54Q70EL1 RNU6-353P-201ENST00000364266 108 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 RNU1-39P-201ENST00000383897 165 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 RNU6-658P-201ENST00000384606 106 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 RNA5SP501-201ENST00000410990 112 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 USP9YP26-201ENST00000421008 661 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC0.81□□□□□ -2.28
USP54Q70EL1 RPL39P28-201ENST00000465655 155 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 AC108729.1-201ENST00000487812 947 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 AC093677.1-201ENST00000514414 678 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 RNU6-229P-201ENST00000516614 102 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.81□□□□□ -2.28
USP54Q70EL1 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC0.81□□□□□ -2.28
USP54Q70EL1 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC0.81□□□□□ -2.28
USP54Q70EL1 AL390208.1-201ENST00000605885 644 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 AC008993.2-201ENST00000631744 806 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 MIR6866-201ENST00000638146 69 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.81□□□□□ -2.28
USP54Q70EL1 ELL2P3-201ENST00000457883 1602 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 RNU6-546P-201ENST00000383991 107 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 Y_RNA.433-201ENST00000384089 102 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
USP54Q70EL1 MIR1262-201ENST00000408276 93 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 RNU6-575P-201ENST00000411326 105 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 TPMTP2-201ENST00000414372 726 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC0.81□□□□□ -2.28
USP54Q70EL1 PTP4A1P4-201ENST00000512479 322 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 RNU6-586P-201ENST00000517265 104 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC0.81□□□□□ -2.28
USP54Q70EL1 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.81□□□□□ -2.28
USP54Q70EL1 AC125611.1-201ENST00000549563 229 ntBASIC0.81□□□□□ -2.28
USP54Q70EL1 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms