Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SNORA19-201ENST00000384737 128 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 MIR578-201ENST00000384828 96 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 RNU6-817P-201ENST00000391083 104 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 U3.42-201ENST00000408746 214 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 CYCSP33-201ENST00000414485 327 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.72□□□□□ -1.81
USP39Q53GS9 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.72□□□□□ -1.81
USP39Q53GS9 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.72□□□□□ -1.81
USP39Q53GS9 CYCSP4-201ENST00000429682 331 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.72□□□□□ -1.81
USP39Q53GS9 DAP3P1-201ENST00000441522 278 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 AL392103.1-201ENST00000447000 198 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 RNU7-169P-201ENST00000459456 61 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 RPL37P6-201ENST00000460682 294 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 RPL21P10-201ENST00000463521 490 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 RN7SL807P-201ENST00000470923 297 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.72□□□□□ -1.81
USP39Q53GS9 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.72□□□□□ -1.81
USP39Q53GS9 AC026784.1-201ENST00000507986 352 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.72□□□□□ -1.81
USP39Q53GS9 RNU7-4P-201ENST00000516961 62 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 RNU6-1073P-201ENST00000517182 106 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.72□□□□□ -1.81
USP39Q53GS9 AP003733.2-201ENST00000529409 171 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.72□□□□□ -1.81
USP39Q53GS9 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.72□□□□□ -1.81
USP39Q53GS9 LRRC37A5P-203ENST00000580181 585 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 AC009779.6-201ENST00000603972 165 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 SNORA62.6-201ENST00000606322 83 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 FTX_2.1-201ENST00000618816 94 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
USP39Q53GS9 AC130454.1-201ENST00000622948 401 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.72□□□□□ -1.81
USP39Q53GS9 MIR3651-201ENST00000630427 90 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.72□□□□□ -1.81
USP39Q53GS9 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP39Q53GS9 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP39Q53GS9 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP39Q53GS9 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP39Q53GS9 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
USP39Q53GS9 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.71□□□□□ -1.82
USP39Q53GS9 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USP39Q53GS9 RNU6-1155P-201ENST00000363554 107 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 Y_RNA.180-201ENST00000363867 113 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 RNU4-50P-201ENST00000364361 141 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 Y_RNA.462-201ENST00000384268 102 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 SNORA51.11-201ENST00000384442 131 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
USP39Q53GS9 RNU2-33P-201ENST00000410344 192 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USP39Q53GS9 SSXP9-201ENST00000417503 292 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 RPL21P38-201ENST00000418090 167 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 TOMM22P1-201ENST00000418578 312 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 AC004866.2-201ENST00000438285 481 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.71□□□□□ -1.82
USP39Q53GS9 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
USP39Q53GS9 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.71□□□□□ -1.82
USP39Q53GS9 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.71□□□□□ -1.82
USP39Q53GS9 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USP39Q53GS9 TRBVB-201ENST00000477100 408 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 Y_RNA.687-201ENST00000516558 91 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 MIR2114-201ENST00000516645 80 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 SNORA40.15-201ENST00000516884 107 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 RNU6-182P-201ENST00000516970 105 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 RN7SKP57-201ENST00000517248 293 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 AC069113.1-201ENST00000517763 267 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.71□□□□□ -1.82
USP39Q53GS9 AC010900.2-201ENST00000604508 210 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 U6.104-201ENST00000637979 90 ntBASIC3.71□□□□□ -1.82
USP39Q53GS9 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
USP39Q53GS9 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.71□□□□□ -1.82
USP39Q53GS9 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
USP39Q53GS9 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.71□□□□□ -1.82
USP39Q53GS9 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.71□□□□□ -1.82
USP39Q53GS9 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
USP39Q53GS9 AL672296.1-201ENST00000427780 2158 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
USP39Q53GS9 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
USP39Q53GS9 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
USP39Q53GS9 SNORD9-201ENST00000362566 104 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 RNU6-338P-201ENST00000383888 105 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 Y_RNA.416-201ENST00000384014 113 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 Y_RNA.526-201ENST00000384572 110 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 MIR490-201ENST00000384865 128 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 RNA5SP424-201ENST00000390988 115 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 MTHFD2P2-201ENST00000407725 247 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 RNU6-130P-201ENST00000411112 103 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 RNU6-607P-201ENST00000411283 108 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.7□□□□□ -1.82
USP39Q53GS9 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.7□□□□□ -1.82
USP39Q53GS9 RPS29P2-201ENST00000479278 136 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 AL049830.2-201ENST00000480072 201 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 TRBV12-2-201ENST00000489763 344 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.7□□□□□ -1.82
USP39Q53GS9 RNU6-1095P-201ENST00000516148 108 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 RN7SKP289-201ENST00000517244 295 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 AC007458.1-201ENST00000542812 373 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.7□□□□□ -1.82
USP39Q53GS9 OR4H12P-201ENST00000556269 907 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms