Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 ANP32BP2-201ENST00000454525 545 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 RPL39P38-201ENST00000467018 153 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 UBL5P3-201ENST00000475112 231 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 HSPE1P6-201ENST00000479457 291 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 MTND1P19-201ENST00000511780 315 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 RNU6-911P-201ENST00000516523 104 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 RNU6-897P-201ENST00000517135 105 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.45□□□□□ -1.86
COL4A3Q01955 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.45□□□□□ -1.86
COL4A3Q01955 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.45□□□□□ -1.86
COL4A3Q01955 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.45□□□□□ -1.86
COL4A3Q01955 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.45□□□□□ -1.86
COL4A3Q01955 AC005951.2-201ENST00000576282 495 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 AC008962.1-201ENST00000605729 304 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 MIR7106-201ENST00000612419 65 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 MIR1244-1-201ENST00000612829 85 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 AF117829.1-206ENST00000621883 3802 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 MIR1244-3-201ENST00000635744 85 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 MIR1244-2-201ENST00000636449 85 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 Z99571.1-201ENST00000636677 394 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 MIR1244-4-202ENST00000636813 85 ntBASIC3.45□□□□□ -1.86
COL4A3Q01955 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL4A3Q01955 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.45□□□□□ -1.86
COL4A3Q01955 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL4A3Q01955 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
COL4A3Q01955 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC3.45□□□□□ -1.86
COL4A3Q01955 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.45□□□□□ -1.86
COL4A3Q01955 RNU6-1317P-201ENST00000364582 104 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 RNU6-7-201ENST00000364784 107 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 RNU6-8-201ENST00000365467 107 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 RNU6-356P-201ENST00000384140 107 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 Y_RNA.477-201ENST00000384352 108 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 MIR301A-201ENST00000385261 86 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 U3.19-201ENST00000390893 196 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 SNORA69.1-201ENST00000390904 137 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 RNU2-38P-201ENST00000410856 79 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 AC007098.1-201ENST00000420122 367 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A3Q01955 AL138785.1-201ENST00000425821 331 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.44□□□□□ -1.86
COL4A3Q01955 MTND4LP30-201ENST00000454092 297 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 AC087588.1-201ENST00000462203 316 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A3Q01955 AC022493.1-201ENST00000492984 337 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 HMGB3P17-201ENST00000504195 649 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A3Q01955 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.44□□□□□ -1.86
COL4A3Q01955 RNU6-927P-201ENST00000516199 100 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 SCARNA20.6-201ENST00000517251 106 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.44□□□□□ -1.86
COL4A3Q01955 TRAV32-201ENST00000553993 340 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 AMZ2P1-203ENST00000565833 850 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A3Q01955 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.44□□□□□ -1.86
COL4A3Q01955 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.44□□□□□ -1.86
COL4A3Q01955 AC007390.2-201ENST00000606229 3803 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 AL512643.1-201ENST00000635735 524 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A3Q01955 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.44□□□□□ -1.86
COL4A3Q01955 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A3Q01955 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A3Q01955 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A3Q01955 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC3.44□□□□□ -1.86
COL4A3Q01955 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A3Q01955 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL4A3Q01955 TNPO1P3-201ENST00000436471 2662 ntBASIC3.44□□□□□ -1.86
COL4A3Q01955 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A3Q01955 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
COL4A3Q01955 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A3Q01955 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A3Q01955 Y_RNA.533-201ENST00000384596 114 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-700P-201ENST00000391043 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-1093P-201ENST00000391194 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.43□□□□□ -1.86
COL4A3Q01955 MTND5P15-201ENST00000434246 349 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.43□□□□□ -1.86
COL4A3Q01955 NDUFB4P9-201ENST00000511646 388 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 MIR892C-201ENST00000516410 77 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU4-60P-201ENST00000517239 135 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.43□□□□□ -1.86
COL4A3Q01955 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.43□□□□□ -1.86
COL4A3Q01955 MIR5696-201ENST00000578474 85 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 AP000787.2-201ENST00000604432 568 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A3Q01955 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
COL4A3Q01955 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A3Q01955 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
COL4A3Q01955 AC006504.1-201ENST00000562493 3666 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A3Q01955 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-37P-201ENST00000362692 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 Y_RNA.60-201ENST00000362831 98 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-11P-201ENST00000364234 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-512P-201ENST00000364438 103 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-25P-201ENST00000383873 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-1-201ENST00000383898 107 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-1074P-201ENST00000383995 104 ntBASIC3.43□□□□□ -1.86
COL4A3Q01955 RNU6-48P-201ENST00000384161 107 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms