Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC006504.1-201ENST00000562493 3666 ntBASIC4.25□□□□□ -1.73
LIG3P49916 AC090617.3-201ENST00000573670 475 ntBASIC4.25□□□□□ -1.73
LIG3P49916 MIR3128-201ENST00000581957 66 ntBASIC4.25□□□□□ -1.73
LIG3P49916 AL110115.1-201ENST00000614396 364 ntBASIC4.25□□□□□ -1.73
LIG3P49916 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.25□□□□□ -1.73
LIG3P49916 MTND5P6-201ENST00000422338 1798 ntBASIC4.25□□□□□ -1.73
LIG3P49916 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.24□□□□□ -1.73
LIG3P49916 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LIG3P49916 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.24□□□□□ -1.73
LIG3P49916 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
LIG3P49916 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
LIG3P49916 Y_RNA.105-201ENST00000363182 111 ntBASIC4.24□□□□□ -1.73
LIG3P49916 SNORA20.1-201ENST00000364790 130 ntBASIC4.24□□□□□ -1.73
LIG3P49916 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LIG3P49916 RNU6-1286P-201ENST00000383871 107 ntBASIC4.24□□□□□ -1.73
LIG3P49916 Y_RNA.439-201ENST00000384119 94 ntBASIC4.24□□□□□ -1.73
LIG3P49916 RNU6-1026P-201ENST00000384465 108 ntBASIC4.24□□□□□ -1.73
LIG3P49916 SNORA37-201ENST00000384504 129 ntBASIC4.24□□□□□ -1.73
LIG3P49916 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.24□□□□□ -1.73
LIG3P49916 AP000907.1-201ENST00000428428 510 ntBASIC4.24□□□□□ -1.73
LIG3P49916 AC009296.1-201ENST00000443146 155 ntBASIC4.24□□□□□ -1.73
LIG3P49916 AC125238.1-201ENST00000448842 249 ntBASIC4.24□□□□□ -1.73
LIG3P49916 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
LIG3P49916 AC010469.2-201ENST00000496412 480 ntBASIC4.24□□□□□ -1.73
LIG3P49916 RN7SKP272-201ENST00000516988 232 ntBASIC4.24□□□□□ -1.73
LIG3P49916 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.24□□□□□ -1.73
LIG3P49916 TOMM20P2-201ENST00000540082 421 ntBASIC4.24□□□□□ -1.73
LIG3P49916 AC093023.1-201ENST00000547375 507 ntBASIC4.24□□□□□ -1.73
LIG3P49916 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC4.24□□□□□ -1.73
LIG3P49916 NACAP3-201ENST00000552100 481 ntBASIC4.24□□□□□ -1.73
LIG3P49916 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.24□□□□□ -1.73
LIG3P49916 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.24□□□□□ -1.73
LIG3P49916 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.24□□□□□ -1.73
LIG3P49916 AC141273.2-201ENST00000618989 130 ntBASIC4.24□□□□□ -1.73
LIG3P49916 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LIG3P49916 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
LIG3P49916 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
LIG3P49916 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.24□□□□□ -1.73
LIG3P49916 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
LIG3P49916 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
LIG3P49916 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.23□□□□□ -1.73
LIG3P49916 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
LIG3P49916 AP001148.1-201ENST00000624124 2359 ntBASIC4.23□□□□□ -1.73
LIG3P49916 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.23□□□□□ -1.73
LIG3P49916 Y_RNA.60-201ENST00000362831 98 ntBASIC4.23□□□□□ -1.73
LIG3P49916 RNU6-121P-201ENST00000410525 99 ntBASIC4.23□□□□□ -1.73
LIG3P49916 HSPE1P12-201ENST00000412576 301 ntBASIC4.23□□□□□ -1.73
LIG3P49916 RPL21P38-201ENST00000418090 167 ntBASIC4.23□□□□□ -1.73
LIG3P49916 AC096920.1-201ENST00000423991 241 ntBASIC4.23□□□□□ -1.73
LIG3P49916 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC4.23□□□□□ -1.73
LIG3P49916 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4.23□□□□□ -1.73
LIG3P49916 RPL26P9-201ENST00000457466 433 ntBASIC4.23□□□□□ -1.73
LIG3P49916 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.23□□□□□ -1.73
LIG3P49916 RPS26P21-201ENST00000475397 348 ntBASIC4.23□□□□□ -1.73
LIG3P49916 RPS29P19-201ENST00000479709 171 ntBASIC4.23□□□□□ -1.73
LIG3P49916 RPS4XP13-201ENST00000483219 789 ntBASIC4.23□□□□□ -1.73
LIG3P49916 RPL23AP75-201ENST00000491601 451 ntBASIC4.23□□□□□ -1.73
LIG3P49916 RPS27AP10-201ENST00000496103 208 ntBASIC4.23□□□□□ -1.73
LIG3P49916 AC099522.1-202ENST00000514718 367 ntBASIC4.23□□□□□ -1.73
LIG3P49916 IGKV2-38-201ENST00000517443 247 ntBASIC4.23□□□□□ -1.73
LIG3P49916 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.23□□□□□ -1.73
LIG3P49916 SYF2P1-201ENST00000550658 413 ntBASIC4.23□□□□□ -1.73
LIG3P49916 AC010928.2-201ENST00000588017 287 ntBASIC4.23□□□□□ -1.73
LIG3P49916 RPL23AP88-201ENST00000605759 454 ntBASIC4.23□□□□□ -1.73
LIG3P49916 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.23□□□□□ -1.73
LIG3P49916 SDR42E1P4-201ENST00000620894 481 ntBASIC4.23□□□□□ -1.73
LIG3P49916 AC091903.1-201ENST00000624322 454 ntBASIC4.23□□□□□ -1.73
LIG3P49916 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
LIG3P49916 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.22□□□□□ -1.73
LIG3P49916 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
LIG3P49916 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LIG3P49916 SNORD56.1-201ENST00000362913 68 ntBASIC4.22□□□□□ -1.73
LIG3P49916 Y_RNA.478-201ENST00000384358 107 ntBASIC4.22□□□□□ -1.73
LIG3P49916 RNU6-1093P-201ENST00000391194 107 ntBASIC4.22□□□□□ -1.73
LIG3P49916 HMGN2P8-201ENST00000391458 268 ntBASIC4.22□□□□□ -1.73
LIG3P49916 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC4.22□□□□□ -1.73
LIG3P49916 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.22□□□□□ -1.73
LIG3P49916 AC139712.2-201ENST00000424302 339 ntBASIC4.22□□□□□ -1.73
LIG3P49916 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC4.22□□□□□ -1.73
LIG3P49916 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.22□□□□□ -1.73
LIG3P49916 AC092017.2-201ENST00000427600 362 ntBASIC4.22□□□□□ -1.73
LIG3P49916 BX679664.1-201ENST00000434429 253 ntBASIC4.22□□□□□ -1.73
LIG3P49916 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.22□□□□□ -1.73
LIG3P49916 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.22□□□□□ -1.73
LIG3P49916 CR383656.8-201ENST00000549046 145 ntBASIC4.22□□□□□ -1.73
LIG3P49916 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.22□□□□□ -1.73
LIG3P49916 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.22□□□□□ -1.73
LIG3P49916 RN7SL600P-201ENST00000581811 299 ntBASIC4.22□□□□□ -1.73
LIG3P49916 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.22□□□□□ -1.73
LIG3P49916 AC019159.1-201ENST00000605094 187 ntBASIC4.22□□□□□ -1.73
LIG3P49916 AL356157.2-201ENST00000605122 111 ntBASIC4.22□□□□□ -1.73
LIG3P49916 AL591034.3-201ENST00000605511 685 ntBASIC4.22□□□□□ -1.73
LIG3P49916 RMST_6.1-201ENST00000611980 203 ntBASIC4.22□□□□□ -1.73
LIG3P49916 AC068724.3-201ENST00000625906 87 ntBASIC4.22□□□□□ -1.73
LIG3P49916 MIR492-201ENST00000638676 116 ntBASIC4.22□□□□□ -1.73
LIG3P49916 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.22□□□□□ -1.73
LIG3P49916 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.22□□□□□ -1.73
LIG3P49916 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LIG3P49916 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
LIG3P49916 CUL1P1-201ENST00000509510 2425 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms