Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 MTND5P11-201ENST00000511037 1812 ntBASIC0.17□□□□□ -2.38
CHKB-CPT1BH3BT56 AC018630.2-201ENST00000534866 2403 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 RNU6-188P-201ENST00000364207 107 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 RNU4-12P-201ENST00000365233 139 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 RNU4-62P-201ENST00000410125 130 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 USP9YP22-201ENST00000438971 294 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 AC108059.3-201ENST00000456388 214 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 AC026410.2-201ENST00000460281 156 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 ARL2BPP4-201ENST00000506854 471 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 RNU6-229P-201ENST00000516614 102 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 RNA5SP481-201ENST00000516814 122 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 HMGB1P33-201ENST00000563485 527 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 AC093788.1-201ENST00000609356 927 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 AL158163.2-201ENST00000619110 700 ntBASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
CHKB-CPT1BH3BT56 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.15□□□□□ -2.38
CHKB-CPT1BH3BT56 AC023934.1-201ENST00000574529 2389 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 MIR208A-201ENST00000362287 71 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 U3.8-201ENST00000363675 217 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU6-1078P-201ENST00000364522 103 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU6-910P-201ENST00000390844 107 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC020550.1-201ENST00000447385 163 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC010631.1-201ENST00000474150 156 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 OR9N1P-202ENST00000494289 481 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC097473.1-201ENST00000508142 408 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU5A-4P-201ENST00000516588 111 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AP001893.2-201ENST00000526949 202 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 MIR5093-201ENST00000583199 100 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 BNIP3P31-201ENST00000604515 566 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC090578.1-201ENST00000604955 591 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC105148.1-201ENST00000604961 409 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC093913.1-201ENST00000614178 329 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 SCARNA15.3-201ENST00000626315 122 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 SCARNA4.1-201ENST00000628597 123 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 MIR6516-201ENST00000630554 81 ntBASIC0.15□□□□□ -2.39
CHKB-CPT1BH3BT56 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU6-348P-201ENST00000384386 107 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU6-1005P-201ENST00000384519 107 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU1-119P-201ENST00000391122 165 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU6-754P-201ENST00000391166 107 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 BRK1P2-201ENST00000442875 223 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 AC091917.2-201ENST00000505002 744 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU4-57P-201ENST00000515980 135 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 SNORA31.4-201ENST00000516049 129 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 AC006518.2-201ENST00000542513 940 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 AC233266.2-201ENST00000567067 528 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 AC136618.2-201ENST00000575091 400 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 RN7SL622P-201ENST00000585292 275 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 AL391813.2-201ENST00000609113 322 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 TUG1_2.1-201ENST00000614234 87 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 AC009032.1-201ENST00000617574 431 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 AL133216.2-202ENST00000634512 349 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 LINC02555-201ENST00000563933 1951 ntBASIC0.14□□□□□ -2.39
CHKB-CPT1BH3BT56 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 RNA5SP347-201ENST00000362445 119 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU6-655P-201ENST00000362858 107 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU1-17P-201ENST00000363022 152 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU6-839P-201ENST00000363347 108 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 SNORA27.3-201ENST00000364937 134 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 RNU6-1080P-201ENST00000383982 107 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 Y_RNA.510-201ENST00000384511 114 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 MIR29B2-201ENST00000385055 81 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 MTCO2P31-201ENST00000402702 684 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 AC138623.1-201ENST00000418060 216 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 MTCO3P1-205ENST00000422088 832 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 AC104651.1-201ENST00000427559 735 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 AC108667.1-201ENST00000428618 249 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 MTCYBP15-201ENST00000433123 1127 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 MTCYBP11-201ENST00000447254 1109 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 GAPDHP17-201ENST00000449858 1001 ntBASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.13□□□□□ -2.39
CHKB-CPT1BH3BT56 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms