Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AL592182.3-201ENST00000642132 3304 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 Y_RNA.7-201ENST00000362352 102 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 RNU6-211P-201ENST00000384047 107 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 Y_RNA.568-201ENST00000384742 113 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 RNU6-1154P-201ENST00000391001 104 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 RNU5E-9P-201ENST00000411164 104 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 NDUFS5P4-201ENST00000412983 318 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AL162725.1-201ENST00000435405 301 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 RPS23P7-201ENST00000466210 444 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 RN7SL812P-201ENST00000493791 279 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AC020593.1-201ENST00000507399 299 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 RN7SKP122-201ENST00000515923 296 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AC055872.1-201ENST00000570978 278 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AL356575.1-201ENST00000603008 283 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AL160290.3-201ENST00000604869 165 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AC007546.2-201ENST00000623996 360 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AC091895.1-201ENST00000624494 256 ntBASIC4.6□□□□□ -1.67
USP3Q9Y6I4 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.6□□□□□ -1.67
USP3Q9Y6I4 A2MP1-204ENST00000566278 4130 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.67
USP3Q9Y6I4 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
USP3Q9Y6I4 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
USP3Q9Y6I4 U3.15-201ENST00000365398 212 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 SNORA62-201ENST00000365493 153 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 AC068538.1-201ENST00000376856 336 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 RNU1-44P-201ENST00000384453 163 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 RNA5SP372-201ENST00000390836 115 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 SNORA26.3-201ENST00000391119 136 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 MIR888-201ENST00000401186 77 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC4.59□□□□□ -1.67
USP3Q9Y6I4 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.59□□□□□ -1.67
USP3Q9Y6I4 RPL23AP3-201ENST00000453844 468 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 RNU6-625P-201ENST00000459412 107 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC4.59□□□□□ -1.67
USP3Q9Y6I4 RNU6-191P-201ENST00000516295 94 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 RNU4ATAC15P-201ENST00000516415 126 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC4.59□□□□□ -1.67
USP3Q9Y6I4 MIR3138-201ENST00000585238 82 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 AC020895.1-201ENST00000595362 272 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 AC012468.1-201ENST00000604888 430 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
USP3Q9Y6I4 AC114781.5-201ENST00000615297 108 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 MIR6758-201ENST00000620653 63 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 AP001273.1-201ENST00000624493 3152 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 AC140479.6-201ENST00000633535 357 ntBASIC4.59□□□□□ -1.67
USP3Q9Y6I4 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
USP3Q9Y6I4 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.59□□□□□ -1.67
USP3Q9Y6I4 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
USP3Q9Y6I4 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.59□□□□□ -1.68
USP3Q9Y6I4 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.59□□□□□ -1.68
USP3Q9Y6I4 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.68
USP3Q9Y6I4 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
USP3Q9Y6I4 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 AC092593.1-201ENST00000515413 1815 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 RNU6-1290P-201ENST00000362957 109 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 RNU6-873P-201ENST00000363833 107 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 RNU6-245P-201ENST00000384020 107 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 MIR544A-201ENST00000384855 91 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 RPL23AP52-201ENST00000439311 478 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 HMGB3P8-201ENST00000449709 577 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 RN7SL860P-201ENST00000473738 223 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 RN7SL691P-201ENST00000494487 301 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 RNU6-1073P-201ENST00000517182 106 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.58□□□□□ -1.68
USP3Q9Y6I4 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.58□□□□□ -1.68
USP3Q9Y6I4 AL021997.2-201ENST00000615674 271 ntBASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms