Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 AL136164.4-201ENST00000625013 2135 ntBASIC3.53□□□□□ -1.84
CCDC140Q96MF4 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
CCDC140Q96MF4 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC3.53□□□□□ -1.85
CCDC140Q96MF4 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.65-201ENST00000362846 100 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RNU6-961P-201ENST00000363893 105 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RNVU1-6-201ENST00000364688 164 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RNA5SP151-201ENST00000365632 117 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RNU6-338P-201ENST00000383888 105 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RNU6-20P-201ENST00000384106 107 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 SNORA70F-201ENST00000384142 135 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RNU6-378P-201ENST00000384324 107 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RNU6-1026P-201ENST00000384465 108 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 MIR659-201ENST00000384963 97 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 MIR767-201ENST00000390228 109 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.581-201ENST00000391017 97 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RNA5SP354-201ENST00000391247 136 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 CBX3P9-201ENST00000402326 552 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 MIR548H3-201ENST00000408771 118 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.595-201ENST00000410403 105 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RPL23AP93-201ENST00000440847 484 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 AC073264.2-201ENST00000448886 166 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RPL23AP62-201ENST00000463396 453 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RN7SL354P-201ENST00000469282 294 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 AC022795.1-201ENST00000473808 480 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 AC006517.1-201ENST00000480485 328 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RPL36AP48-201ENST00000485521 314 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 SNORA40.9-201ENST00000515895 93 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RNU6-496P-201ENST00000516145 99 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RNU7-110P-201ENST00000516891 62 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 AP001781.1-201ENST00000530977 207 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RN7SL52P-201ENST00000584271 284 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 AL034555.1-201ENST00000604816 211 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 AC011373.1-201ENST00000607270 237 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 AC012531.5-201ENST00000611375 151 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RN7SL722P-201ENST00000617780 284 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RN7SL565P-201ENST00000618246 284 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.52□□□□□ -1.85
CCDC140Q96MF4 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC140Q96MF4 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 CPHL1P-201ENST00000461341 3407 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 SCN1A-220ENST00000641603 12506 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 MIR335-201ENST00000362173 94 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 RNU6-1010P-201ENST00000362757 107 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 SNORD81.1-201ENST00000363064 77 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.277-201ENST00000364754 102 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 RNU1-63P-201ENST00000383902 164 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 SNORD63-201ENST00000384262 68 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 Y_RNA.518-201ENST00000384552 113 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 SDHCP2-201ENST00000398565 501 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 AL603910.2-201ENST00000407268 136 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 AC245028.1-201ENST00000423259 256 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 AL365496.1-201ENST00000426885 215 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 HMGN2P31-201ENST00000432430 273 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 AC112220.1-201ENST00000434628 355 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 AL139109.1-201ENST00000455491 297 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 RN7SL738P-201ENST00000470264 297 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 RRN3P3-201ENST00000549207 578 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 ATP5J2P6-201ENST00000565203 266 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 MIR4330-201ENST00000579077 105 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 AC012493.2-201ENST00000595083 291 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC140Q96MF4 RPL7P50-201ENST00000600588 727 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 BPIFA4P-203ENST00000603168 689 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 MZT1P2-201ENST00000604387 248 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 MIR6780A-201ENST00000615089 68 ntBASIC3.51□□□□□ -1.85
CCDC140Q96MF4 AL391261.4-201ENST00000616012 481 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms