Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNU6-897P-201ENST00000517135 105 ntBASIC3.75□□□□□ -1.81
USP39Q53GS9 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.75□□□□□ -1.81
USP39Q53GS9 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.75□□□□□ -1.81
USP39Q53GS9 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.75□□□□□ -1.81
USP39Q53GS9 AC006600.1-201ENST00000572529 153 ntBASIC3.75□□□□□ -1.81
USP39Q53GS9 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.75□□□□□ -1.81
USP39Q53GS9 RNU6-85P-201ENST00000605989 107 ntBASIC3.75□□□□□ -1.81
USP39Q53GS9 XIST_intron.1-201ENST00000619444 68 ntBASIC3.75□□□□□ -1.81
USP39Q53GS9 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.75□□□□□ -1.81
USP39Q53GS9 MTND5P6-201ENST00000422338 1798 ntBASIC3.75□□□□□ -1.81
USP39Q53GS9 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
USP39Q53GS9 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
USP39Q53GS9 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
USP39Q53GS9 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
USP39Q53GS9 AL049781.1-201ENST00000623195 3585 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.74□□□□□ -1.81
USP39Q53GS9 AC091152.2-201ENST00000591628 2569 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.74□□□□□ -1.81
USP39Q53GS9 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
USP39Q53GS9 HLFP1-201ENST00000402375 499 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 RNA5SP56-201ENST00000410277 118 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 RNU2-14P-201ENST00000411053 191 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 AL030996.1-201ENST00000411430 235 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 RPL21P90-201ENST00000415692 466 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 AL360271.2-201ENST00000447710 161 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 OR2AQ1P-201ENST00000451972 200 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 snoU13.3-201ENST00000459441 104 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 RN7SL93P-201ENST00000463035 293 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 MTND3P25-201ENST00000509243 135 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
USP39Q53GS9 GMPSP1-201ENST00000514075 579 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 RNU6-390P-201ENST00000516259 103 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 RNU6-789P-201ENST00000517105 102 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
USP39Q53GS9 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.74□□□□□ -1.81
USP39Q53GS9 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.74□□□□□ -1.81
USP39Q53GS9 AC090877.1-201ENST00000561418 344 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 AC011471.1-201ENST00000585766 187 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 VN1R91P-201ENST00000594377 169 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 AL355812.1-201ENST00000603215 216 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 AC005000.2-201ENST00000605468 310 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 MIR15A-201ENST00000607334 83 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 MIR7851-201ENST00000610611 160 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 AL591516.1-201ENST00000611326 274 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 AL450472.3-201ENST00000615578 367 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 AL159153.1-201ENST00000619688 317 ntBASIC3.74□□□□□ -1.81
USP39Q53GS9 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.74□□□□□ -1.81
USP39Q53GS9 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.74□□□□□ -1.81
USP39Q53GS9 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.74□□□□□ -1.81
USP39Q53GS9 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
USP39Q53GS9 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
USP39Q53GS9 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.73□□□□□ -1.81
USP39Q53GS9 Y_RNA.20-201ENST00000362479 113 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 RNY1P16-201ENST00000363063 111 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 Y_RNA.111-201ENST00000363248 100 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 RNU6-288P-201ENST00000363690 104 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 Y_RNA.478-201ENST00000384358 107 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 Y_RNA.539-201ENST00000384635 107 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 MT-TC-201ENST00000387405 66 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 AL445529.1-201ENST00000398713 389 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 RNU6-121P-201ENST00000410525 99 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.73□□□□□ -1.81
USP39Q53GS9 PPP1R11P2-201ENST00000423543 382 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 UBE2D3P2-201ENST00000424409 445 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 PIGPP3-201ENST00000425307 415 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 RPL21P66-201ENST00000426566 466 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 AC090774.1-201ENST00000435925 246 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.73□□□□□ -1.81
USP39Q53GS9 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.73□□□□□ -1.81
USP39Q53GS9 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.73□□□□□ -1.81
USP39Q53GS9 BX510359.1-201ENST00000456973 237 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 LINC01399-202ENST00000458450 244 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 RNU7-170P-201ENST00000459303 61 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 HMGB1P35-201ENST00000503360 598 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 AC113155.1-201ENST00000511141 769 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 RNU6-397P-201ENST00000516226 104 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 RNU6-570P-201ENST00000517051 105 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 RN7SKP258-201ENST00000517151 304 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.73□□□□□ -1.81
USP39Q53GS9 AC109329.1-201ENST00000518744 317 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.73□□□□□ -1.81
USP39Q53GS9 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.73□□□□□ -1.81
USP39Q53GS9 SYF2P1-201ENST00000550658 413 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.73□□□□□ -1.81
USP39Q53GS9 AL137100.2-201ENST00000555786 315 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.73□□□□□ -1.81
USP39Q53GS9 AC012669.1-201ENST00000603209 283 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 AL031601.2-202ENST00000622650 282 ntBASIC3.73□□□□□ -1.81
USP39Q53GS9 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.73□□□□□ -1.81
USP39Q53GS9 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
USP39Q53GS9 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
USP39Q53GS9 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP39Q53GS9 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
USP39Q53GS9 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.72□□□□□ -1.81
USP39Q53GS9 AL365440.1-201ENST00000436135 2167 ntBASIC3.72□□□□□ -1.81
USP39Q53GS9 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
USP39Q53GS9 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
USP39Q53GS9 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.72□□□□□ -1.81
USP39Q53GS9 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP39Q53GS9 RNU1-18P-201ENST00000363062 164 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 148.2 ms