Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNU6-804P-201ENST00000384286 107 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 RPS4XP3-201ENST00000398541 413 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 RNU5A-5P-201ENST00000411054 116 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 RNU2-61P-201ENST00000411069 191 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 RPL19P1-201ENST00000411635 428 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 AL353705.4-201ENST00000449661 238 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 RN7SL132P-201ENST00000478131 296 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 AC006517.1-201ENST00000480485 328 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 SNORA31.20-201ENST00000517111 133 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 RNA5SP165-201ENST00000517142 115 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 RNA5SP179-201ENST00000517284 121 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 MTND5P41-201ENST00000517498 206 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.3□□□□□ -1.72
SOX4Q06945 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.3□□□□□ -1.72
SOX4Q06945 HSPE1P5-201ENST00000561489 272 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 MIR3921-201ENST00000577308 85 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 MIR3144-201ENST00000579460 79 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 MIR4282-201ENST00000583613 67 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 AP001485.1-201ENST00000604799 199 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 AC091167.4-201ENST00000605079 184 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 RMST_6.1-201ENST00000611980 203 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.3□□□□□ -1.72
SOX4Q06945 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 AC006065.5-201ENST00000623427 349 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 AC008785.1-201ENST00000624475 456 ntBASIC4.3□□□□□ -1.72
SOX4Q06945 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SOX4Q06945 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.3□□□□□ -1.72
SOX4Q06945 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SOX4Q06945 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC4.29□□□□□ -1.72
SOX4Q06945 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.29□□□□□ -1.72
SOX4Q06945 AL139811.1-201ENST00000424779 2299 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 AC004925.1-201ENST00000624256 2706 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 Y_RNA.8-201ENST00000362353 102 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 Y_RNA.233-201ENST00000364407 101 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 Y_RNA.240-201ENST00000364469 95 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 Y_RNA.275-201ENST00000364726 110 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 Y_RNA.304-201ENST00000365011 112 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 RNU6-81P-201ENST00000365608 104 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.29□□□□□ -1.72
SOX4Q06945 Y_RNA.383-201ENST00000383855 97 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 MIR32-201ENST00000384965 70 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 RAB9AP3-201ENST00000412737 573 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC4.29□□□□□ -1.72
SOX4Q06945 NDUFB4P7-201ENST00000423198 363 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 AL356867.1-201ENST00000429623 299 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 AC011742.1-201ENST00000431448 434 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 MTCO1P5-201ENST00000433573 344 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.29□□□□□ -1.72
SOX4Q06945 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC4.29□□□□□ -1.72
SOX4Q06945 AC124916.1-201ENST00000444020 547 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 RAB9AP1-201ENST00000449393 573 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 SNORA84-201ENST00000459229 133 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 Y_RNA.638-201ENST00000459374 113 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 MRPS18CP4-201ENST00000535821 231 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 RPL23AP88-201ENST00000605759 454 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 AC104465.1-201ENST00000611365 139 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 AL354798.1-201ENST00000622505 329 ntBASIC4.29□□□□□ -1.72
SOX4Q06945 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.29□□□□□ -1.72
SOX4Q06945 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.29□□□□□ -1.72
SOX4Q06945 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
SOX4Q06945 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.29□□□□□ -1.72
SOX4Q06945 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SOX4Q06945 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SOX4Q06945 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.29□□□□□ -1.72
SOX4Q06945 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
SOX4Q06945 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SOX4Q06945 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.28□□□□□ -1.72
SOX4Q06945 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SOX4Q06945 AC068254.2-201ENST00000623938 3577 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SOX4Q06945 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.28□□□□□ -1.72
SOX4Q06945 AC008725.1-201ENST00000605123 2263 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 SNORA25.1-201ENST00000362326 128 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 RNU6-105P-201ENST00000363909 104 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 RNU6-72P-201ENST00000384285 79 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 RNU6-21P-201ENST00000384710 107 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 MIR708-201ENST00000390708 88 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 RNU6-918P-201ENST00000391219 106 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 SNORD12B-201ENST00000410433 91 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 RN7SKP202-201ENST00000410439 330 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 RNU6-394P-201ENST00000410735 107 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.28□□□□□ -1.72
SOX4Q06945 AL445584.1-201ENST00000431451 330 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 CYCSP32-201ENST00000440548 321 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC4.28□□□□□ -1.72
SOX4Q06945 AP000870.1-201ENST00000472927 406 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 PPBPP1-201ENST00000510807 373 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 RNU7-110P-201ENST00000516891 62 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 RNU1-45P-201ENST00000517191 141 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 AC023632.4-201ENST00000517783 191 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.28□□□□□ -1.72
SOX4Q06945 MED28P6-201ENST00000558776 231 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 H3F3AP1-201ENST00000559984 334 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 CYP4A43P-201ENST00000568156 121 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 MIR5685-201ENST00000579080 79 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.28□□□□□ -1.72
SOX4Q06945 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 AC099506.2-201ENST00000623074 221 ntBASIC4.28□□□□□ -1.72
SOX4Q06945 AL356489.2-201ENST00000566968 3528 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 143.5 ms