Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC006518.2-201ENST00000542513 940 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AL359212.1-201ENST00000556608 614 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC073410.2-201ENST00000603240 332 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC016925.2-201ENST00000605108 242 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC100812.1-201ENST00000607622 580 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AL138478.1-201ENST00000612252 832 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC0.2□□□□□ -2.38
COL7A1Q02388 AC040168.1-201ENST00000623594 991 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 AC091925.2-201ENST00000625059 256 ntBASIC0.2□□□□□ -2.38
COL7A1Q02388 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.19□□□□□ -2.38
COL7A1Q02388 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.19□□□□□ -2.38
COL7A1Q02388 U3.20-201ENST00000390909 217 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.19□□□□□ -2.38
COL7A1Q02388 ZNF863P-201ENST00000426746 417 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 CR769776.1-201ENST00000441254 787 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC0.19□□□□□ -2.38
COL7A1Q02388 RPS20P24-201ENST00000457473 361 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 RNU6-775P-201ENST00000459318 96 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 MTND1P16-201ENST00000465177 898 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 HMGB1P36-201ENST00000487709 576 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.19□□□□□ -2.38
COL7A1Q02388 SNORA76.2-201ENST00000517095 137 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 RNA5SP437-201ENST00000517249 129 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC0.19□□□□□ -2.38
COL7A1Q02388 PTK2-220ENST00000520151 573 ntTSL 4 BASIC0.19□□□□□ -2.38
COL7A1Q02388 NAP1L1P1-201ENST00000524793 1063 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC0.19□□□□□ -2.38
COL7A1Q02388 AC009712.1-201ENST00000564938 316 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.19□□□□□ -2.38
COL7A1Q02388 MIR4305-201ENST00000583252 102 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC0.19□□□□□ -2.38
COL7A1Q02388 AL669831.4-202ENST00000590817 238 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 NIFKP6-201ENST00000598115 845 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AC010738.1-201ENST00000604970 987 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AL022345.1-201ENST00000607292 135 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC0.19□□□□□ -2.38
COL7A1Q02388 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
COL7A1Q02388 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.19□□□□□ -2.38
COL7A1Q02388 RNU6-271P-201ENST00000363858 105 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AL117342.1-201ENST00000404861 406 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 MIR1303-201ENST00000408625 86 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AC096920.1-201ENST00000423991 241 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.19□□□□□ -2.38
COL7A1Q02388 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC0.19□□□□□ -2.38
COL7A1Q02388 GTF2IP13-201ENST00000438487 386 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 RAC1P7-201ENST00000445367 377 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 Z82190.1-201ENST00000454534 490 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 CYP2C59P-201ENST00000457790 269 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 SUMO1P1-201ENST00000497904 306 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
COL7A1Q02388 SNORA4.4-201ENST00000515921 135 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC0.19□□□□□ -2.38
COL7A1Q02388 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.19□□□□□ -2.38
COL7A1Q02388 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC0.19□□□□□ -2.38
COL7A1Q02388 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC0.19□□□□□ -2.38
COL7A1Q02388 MTCYBP27-201ENST00000555160 670 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AL356432.3-201ENST00000568952 465 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AC015688.2-201ENST00000584523 262 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AC090116.1-201ENST00000615679 446 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.19□□□□□ -2.38
COL7A1Q02388 AC091965.5-201ENST00000624785 342 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC0.19□□□□□ -2.38
COL7A1Q02388 AL590396.4-201ENST00000636779 956 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 U2.21-201ENST00000637295 81 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 AC100810.6-201ENST00000638068 285 ntBASIC0.19□□□□□ -2.38
COL7A1Q02388 RNU6-673P-201ENST00000365084 104 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 RNA5SP240-201ENST00000365355 128 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 MIR421-201ENST00000365696 85 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 RPS24P7-201ENST00000416921 246 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 PIGFP2-201ENST00000421400 651 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 ELOCP11-201ENST00000436690 332 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 ELOCP16-201ENST00000444494 332 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC0.18□□□□□ -2.38
COL7A1Q02388 AC114982.1-201ENST00000469402 321 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC0.18□□□□□ -2.38
COL7A1Q02388 AC013828.1-201ENST00000481845 158 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC025459.1-201ENST00000504072 156 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC004217.3-201ENST00000551552 878 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AL049870.4-201ENST00000555741 486 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC022254.1-201ENST00000567857 235 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 MIR4504-201ENST00000577413 92 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 BNIP3P25-201ENST00000596023 559 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC0.18□□□□□ -2.38
COL7A1Q02388 AC012065.4-201ENST00000602445 679 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 SNRPGP20-201ENST00000604477 205 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC004853.1-201ENST00000604902 698 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC135803.1-201ENST00000608748 565 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AP000238.1-201ENST00000608759 426 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC009233.1-201ENST00000616477 371 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 ZNF849P-201ENST00000594711 1566 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 RNU6-619P-201ENST00000365146 108 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 RNU6-1083P-201ENST00000384022 107 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC0.18□□□□□ -2.38
COL7A1Q02388 DSTNP4-201ENST00000399472 474 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AL355615.1-201ENST00000406187 641 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 MTATP6P31-201ENST00000406985 692 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 TAF13P2-201ENST00000416876 286 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC092047.1-201ENST00000424997 240 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 AC245102.2-201ENST00000448956 180 ntBASIC0.18□□□□□ -2.38
COL7A1Q02388 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms