Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXC9P31274 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.02□□□□□ -1.93
HOXC9P31274 AC078899.3-201ENST00000599065 212 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 BNIP3P30-201ENST00000601184 574 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 AL162413.1-201ENST00000603198 110 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 MTND4LP5-201ENST00000605152 292 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 AP001486.3-201ENST00000615334 372 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 MIR6766-201ENST00000622641 72 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 AP003122.6-201ENST00000623831 495 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXC9P31274 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXC9P31274 MIR6733-201ENST00000635723 61 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 MIR1321-201ENST00000637766 79 ntBASIC3.02□□□□□ -1.93
HOXC9P31274 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.02□□□□□ -1.93
HOXC9P31274 HSPA8P4-201ENST00000511877 1920 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 MTND4P35-201ENST00000604257 1375 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXC9P31274 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXC9P31274 NACAP2-201ENST00000318548 624 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 Y_RNA.38-201ENST00000362617 102 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
HOXC9P31274 AL023284.1-201ENST00000403956 276 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 CIR1P3-201ENST00000405137 479 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 RNU4-46P-201ENST00000410818 138 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.01□□□□□ -1.93
HOXC9P31274 GTF2IP20-201ENST00000431663 360 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXC9P31274 AL591704.1-201ENST00000432574 275 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 SEPT14P3-201ENST00000439401 183 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXC9P31274 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXC9P31274 AL732372.2-207ENST00000445840 183 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 AC003071.1-201ENST00000451219 789 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 SEPT14P2-201ENST00000453405 183 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXC9P31274 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXC9P31274 SEPT14P4-201ENST00000513445 186 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 RNU6-835P-201ENST00000516974 104 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXC9P31274 AC093331.1-201ENST00000521474 169 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 FO082796.1-201ENST00000523795 183 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 AC084851.1-201ENST00000529105 249 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXC9P31274 AL157871.3-201ENST00000557231 293 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 AC105137.2-201ENST00000569073 466 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 MIR5583-1-201ENST00000580941 59 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 AL138880.2-201ENST00000616214 239 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXC9P31274 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.01□□□□□ -1.93
HOXC9P31274 MIR3688-2-201ENST00000636963 87 ntBASIC3.01□□□□□ -1.93
HOXC9P31274 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.01□□□□□ -1.93
HOXC9P31274 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
HOXC9P31274 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HOXC9P31274 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
HOXC9P31274 MTND4P14-201ENST00000435799 1354 ntBASIC3□□□□□ -1.93
HOXC9P31274 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3□□□□□ -1.93
HOXC9P31274 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXC9P31274 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3□□□□□ -1.93
HOXC9P31274 RNY4P14-201ENST00000363656 96 ntBASIC3□□□□□ -1.93
HOXC9P31274 Y_RNA.256-201ENST00000364594 104 ntBASIC3□□□□□ -1.93
HOXC9P31274 SNORA67.3-201ENST00000384366 140 ntBASIC3□□□□□ -1.93
HOXC9P31274 AL606923.1-201ENST00000406616 190 ntBASIC3□□□□□ -1.93
HOXC9P31274 RNU6-1025P-201ENST00000410629 104 ntBASIC3□□□□□ -1.93
HOXC9P31274 RNU6-1068P-201ENST00000410958 103 ntBASIC3□□□□□ -1.93
HOXC9P31274 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC3□□□□□ -1.93
HOXC9P31274 MTCYBP5-201ENST00000423752 1135 ntBASIC3□□□□□ -1.93
HOXC9P31274 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3□□□□□ -1.93
HOXC9P31274 USP9YP28-201ENST00000435142 589 ntBASIC3□□□□□ -1.93
HOXC9P31274 IFNA11P-201ENST00000446352 526 ntBASIC3□□□□□ -1.93
HOXC9P31274 GSTA11P-201ENST00000452866 669 ntBASIC3□□□□□ -1.93
HOXC9P31274 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3□□□□□ -1.93
HOXC9P31274 TRBV1-201ENST00000476502 284 ntBASIC3□□□□□ -1.93
HOXC9P31274 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3□□□□□ -1.93
HOXC9P31274 RNU6-1178P-201ENST00000516674 107 ntBASIC3□□□□□ -1.93
HOXC9P31274 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3□□□□□ -1.93
HOXC9P31274 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3□□□□□ -1.93
HOXC9P31274 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3□□□□□ -1.93
HOXC9P31274 DNAJC8P1-201ENST00000554535 372 ntBASIC3□□□□□ -1.93
HOXC9P31274 uc_338.11-201ENST00000619132 160 ntBASIC3□□□□□ -1.93
HOXC9P31274 AC092881.1-201ENST00000638218 2733 ntBASIC3□□□□□ -1.93
HOXC9P31274 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3□□□□□ -1.93
HOXC9P31274 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
HOXC9P31274 Y_RNA.33-201ENST00000362591 102 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXC9P31274 RNU6-198P-201ENST00000384258 104 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 EEF1A1P40-201ENST00000412883 573 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.99□□□□□ -1.93
HOXC9P31274 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXC9P31274 HMGN2P30-201ENST00000423237 256 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.99□□□□□ -1.93
HOXC9P31274 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXC9P31274 RPS29P20-201ENST00000489592 171 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 AC009901.1-201ENST00000506703 541 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 MTCO3P9-201ENST00000506989 781 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.99□□□□□ -1.93
HOXC9P31274 AC025755.1-201ENST00000521306 278 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.99□□□□□ -1.93
HOXC9P31274 BNIP3P6-201ENST00000549284 499 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 AC015712.3-201ENST00000559380 164 ntBASIC2.99□□□□□ -1.93
HOXC9P31274 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms