Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RNU6-212P-201ENST00000362642 104 ntBASIC2.75□□□□□ -1.97
BDNFP23560 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
BDNFP23560 RNU6-45P-201ENST00000384471 107 ntBASIC2.75□□□□□ -1.97
BDNFP23560 MIR29B2-201ENST00000385055 81 ntBASIC2.75□□□□□ -1.97
BDNFP23560 CBX3P9-201ENST00000402326 552 ntBASIC2.75□□□□□ -1.97
BDNFP23560 SNORD88.1-201ENST00000408684 91 ntBASIC2.75□□□□□ -1.97
BDNFP23560 RNU6-1245P-201ENST00000411130 106 ntBASIC2.75□□□□□ -1.97
BDNFP23560 RNU6-607P-201ENST00000411283 108 ntBASIC2.75□□□□□ -1.97
BDNFP23560 RNU6-195P-201ENST00000411352 109 ntBASIC2.75□□□□□ -1.97
BDNFP23560 USP9YP20-201ENST00000419224 558 ntBASIC2.75□□□□□ -1.97
BDNFP23560 AL596276.1-201ENST00000434465 418 ntBASIC2.75□□□□□ -1.97
BDNFP23560 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.75□□□□□ -1.97
BDNFP23560 MTND3P7-201ENST00000474435 343 ntBASIC2.75□□□□□ -1.97
BDNFP23560 AC107032.1-201ENST00000485945 480 ntBASIC2.75□□□□□ -1.97
BDNFP23560 LRRC34P2-201ENST00000514850 553 ntBASIC2.75□□□□□ -1.97
BDNFP23560 RNA5SP282-201ENST00000516355 108 ntBASIC2.75□□□□□ -1.97
BDNFP23560 RNA5SP148-201ENST00000516527 94 ntBASIC2.75□□□□□ -1.97
BDNFP23560 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.75□□□□□ -1.97
BDNFP23560 AC034114.1-201ENST00000520293 285 ntBASIC2.75□□□□□ -1.97
BDNFP23560 DUXAP5-201ENST00000529668 529 ntBASIC2.75□□□□□ -1.97
BDNFP23560 BNIP3P6-201ENST00000549284 499 ntBASIC2.75□□□□□ -1.97
BDNFP23560 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.75□□□□□ -1.97
BDNFP23560 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.75□□□□□ -1.97
BDNFP23560 AC093249.1-201ENST00000567049 203 ntBASIC2.75□□□□□ -1.97
BDNFP23560 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.75□□□□□ -1.97
BDNFP23560 MIR4513-201ENST00000581077 86 ntBASIC2.75□□□□□ -1.97
BDNFP23560 AC023043.3-201ENST00000593113 385 ntBASIC2.75□□□□□ -1.97
BDNFP23560 AC090517.3-201ENST00000625170 141 ntBASIC2.75□□□□□ -1.97
BDNFP23560 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
BDNFP23560 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
BDNFP23560 U3.12-201ENST00000364498 214 ntBASIC2.74□□□□□ -1.97
BDNFP23560 RNU4-48P-201ENST00000365559 182 ntBASIC2.74□□□□□ -1.97
BDNFP23560 RNU6-550P-201ENST00000391057 101 ntBASIC2.74□□□□□ -1.97
BDNFP23560 BTF3L4P1-201ENST00000413813 468 ntBASIC2.74□□□□□ -1.97
BDNFP23560 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.74□□□□□ -1.97
BDNFP23560 AC011816.1-201ENST00000441346 546 ntBASIC2.74□□□□□ -1.97
BDNFP23560 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.74□□□□□ -1.97
BDNFP23560 MRPL50P4-201ENST00000446432 475 ntBASIC2.74□□□□□ -1.97
BDNFP23560 SRIP1-201ENST00000489235 288 ntBASIC2.74□□□□□ -1.97
BDNFP23560 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.74□□□□□ -1.97
BDNFP23560 RN7SKP256-201ENST00000517201 314 ntBASIC2.74□□□□□ -1.97
BDNFP23560 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.74□□□□□ -1.97
BDNFP23560 LRRC37A5P-203ENST00000580181 585 ntBASIC2.74□□□□□ -1.97
BDNFP23560 AL590229.1-201ENST00000603497 542 ntBASIC2.74□□□□□ -1.97
BDNFP23560 SNRPGP17-201ENST00000603780 214 ntBASIC2.74□□□□□ -1.97
BDNFP23560 NDUFA8P1-201ENST00000605525 367 ntBASIC2.74□□□□□ -1.97
BDNFP23560 MIR6840-201ENST00000611937 71 ntBASIC2.74□□□□□ -1.97
BDNFP23560 AC011155.2-201ENST00000623202 216 ntBASIC2.74□□□□□ -1.97
BDNFP23560 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
BDNFP23560 AC008555.8-201ENST00000623602 2168 ntBASIC2.74□□□□□ -1.97
BDNFP23560 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
BDNFP23560 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
BDNFP23560 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.73□□□□□ -1.97
BDNFP23560 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.73□□□□□ -1.97
BDNFP23560 SNORD56.1-201ENST00000362913 68 ntBASIC2.73□□□□□ -1.97
BDNFP23560 RNU6-74P-201ENST00000384235 107 ntBASIC2.73□□□□□ -1.97
BDNFP23560 RNU6-456P-201ENST00000384493 107 ntBASIC2.73□□□□□ -1.97
BDNFP23560 AL590556.1-201ENST00000423231 483 ntBASIC2.73□□□□□ -1.97
BDNFP23560 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.73□□□□□ -1.97
BDNFP23560 AC245102.2-201ENST00000448956 180 ntBASIC2.73□□□□□ -1.97
BDNFP23560 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC2.73□□□□□ -1.97
BDNFP23560 CACYBPP2-201ENST00000453625 678 ntBASIC2.73□□□□□ -1.97
BDNFP23560 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.73□□□□□ -1.97
BDNFP23560 AP001025.1-201ENST00000486139 332 ntBASIC2.73□□□□□ -1.97
BDNFP23560 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC2.73□□□□□ -1.97
BDNFP23560 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.73□□□□□ -1.97
BDNFP23560 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.73□□□□□ -1.97
BDNFP23560 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.73□□□□□ -1.97
BDNFP23560 RNU1-86P-201ENST00000516108 154 ntBASIC2.73□□□□□ -1.97
BDNFP23560 RNU1-107P-201ENST00000516617 154 ntBASIC2.73□□□□□ -1.97
BDNFP23560 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.73□□□□□ -1.97
BDNFP23560 AC243972.3-201ENST00000539655 198 ntBASIC2.73□□□□□ -1.97
BDNFP23560 AC004486.1-201ENST00000546846 233 ntBASIC2.73□□□□□ -1.97
BDNFP23560 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.73□□□□□ -1.97
BDNFP23560 MIR5694-201ENST00000581190 76 ntBASIC2.73□□□□□ -1.97
BDNFP23560 MIR3941-201ENST00000582572 103 ntBASIC2.73□□□□□ -1.97
BDNFP23560 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.73□□□□□ -1.97
BDNFP23560 AL031274.2-201ENST00000599419 203 ntBASIC2.73□□□□□ -1.97
BDNFP23560 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.73□□□□□ -1.97
BDNFP23560 Z84480.1-201ENST00000605131 311 ntBASIC2.73□□□□□ -1.97
BDNFP23560 AC026790.2-201ENST00000606282 430 ntBASIC2.73□□□□□ -1.97
BDNFP23560 RMST_7.1-201ENST00000621935 268 ntBASIC2.73□□□□□ -1.97
BDNFP23560 AC243829.7-201ENST00000633081 225 ntBASIC2.73□□□□□ -1.97
BDNFP23560 AL390237.1-201ENST00000404226 1415 ntBASIC2.73□□□□□ -1.97
BDNFP23560 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
BDNFP23560 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.72□□□□□ -1.97
BDNFP23560 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.72□□□□□ -1.97
BDNFP23560 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.72□□□□□ -1.97
BDNFP23560 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
BDNFP23560 RNU6-78P-201ENST00000362897 107 ntBASIC2.72□□□□□ -1.97
BDNFP23560 U3.4-201ENST00000363352 213 ntBASIC2.72□□□□□ -1.97
BDNFP23560 RNU6-527P-201ENST00000363425 104 ntBASIC2.72□□□□□ -1.97
BDNFP23560 RNA5SP210-201ENST00000391034 120 ntBASIC2.72□□□□□ -1.97
BDNFP23560 AL162578.1-201ENST00000406202 378 ntBASIC2.72□□□□□ -1.97
BDNFP23560 RNU6-248P-201ENST00000410720 107 ntBASIC2.72□□□□□ -1.97
BDNFP23560 AL022238.1-201ENST00000442557 355 ntBASIC2.72□□□□□ -1.97
BDNFP23560 KATNBL1P3-201ENST00000443475 909 ntBASIC2.72□□□□□ -1.97
BDNFP23560 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.72□□□□□ -1.97
BDNFP23560 AL121594.1-201ENST00000475906 575 ntBASIC2.72□□□□□ -1.97
BDNFP23560 RN7SL297P-201ENST00000483161 293 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms