Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL109913.1-201ENST00000421173 514 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 TRIM60P3Y-201ENST00000432201 673 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC0.2□□□□□ -2.38
COL6A3P12111 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.2□□□□□ -2.38
COL6A3P12111 HMGB1P14-201ENST00000557424 591 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC0.2□□□□□ -2.38
COL6A3P12111 AC016925.2-201ENST00000605108 242 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AL161423.1-201ENST00000613700 262 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 ELOCP11-201ENST00000436690 332 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 ELOCP16-201ENST00000444494 332 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 Z82190.1-201ENST00000454534 490 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC0.2□□□□□ -2.38
COL6A3P12111 AC025423.2-201ENST00000537570 439 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AC092470.1-201ENST00000546187 132 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 MIR3198-2-201ENST00000577868 80 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 MIR4765-201ENST00000585007 77 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.2□□□□□ -2.38
COL6A3P12111 AC123767.1-202ENST00000620407 817 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC0.2□□□□□ -2.38
COL6A3P12111 AC099654.5-201ENST00000636479 350 ntBASIC0.2□□□□□ -2.38
COL6A3P12111 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC0.19□□□□□ -2.38
COL6A3P12111 AL049545.1-201ENST00000401856 572 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.19□□□□□ -2.38
COL6A3P12111 PIGFP2-201ENST00000421400 651 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC0.19□□□□□ -2.38
COL6A3P12111 AC241584.1-201ENST00000438469 1241 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.19□□□□□ -2.38
COL6A3P12111 AL589880.1-201ENST00000448271 287 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC0.19□□□□□ -2.38
COL6A3P12111 AC107626.1-201ENST00000471084 183 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC0.19□□□□□ -2.38
COL6A3P12111 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC0.19□□□□□ -2.38
COL6A3P12111 AC018462.2-201ENST00000605375 395 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 AC073349.3-201ENST00000617616 186 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 AC098614.2-201ENST00000426040 255 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 RAC1P8-201ENST00000427086 527 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 AC091959.1-201ENST00000495857 238 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
COL6A3P12111 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.19□□□□□ -2.38
COL6A3P12111 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.19□□□□□ -2.38
COL6A3P12111 AC019288.1-201ENST00000557918 224 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC0.19□□□□□ -2.38
COL6A3P12111 AC022202.1-201ENST00000613515 211 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 AL360181.4-201ENST00000621752 134 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 AC027309.3-201ENST00000623419 351 ntBASIC0.19□□□□□ -2.38
COL6A3P12111 Y_RNA.543-201ENST00000384649 107 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 SNORA40.19-201ENST00000390846 128 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 RNU6-837P-201ENST00000391056 108 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 U6atac.2-201ENST00000408644 118 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC0.18□□□□□ -2.38
COL6A3P12111 AC092393.1-201ENST00000439625 742 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 RNFT1P2-201ENST00000443064 757 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC0.18□□□□□ -2.38
COL6A3P12111 MIR892C-201ENST00000516410 77 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 SCARNA11.3-201ENST00000517276 130 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 NAP1L1P1-201ENST00000524793 1063 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC0.18□□□□□ -2.38
COL6A3P12111 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC0.18□□□□□ -2.38
COL6A3P12111 AL133370.2-201ENST00000619934 439 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 AP000943.4-201ENST00000622912 357 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC0.18□□□□□ -2.38
COL6A3P12111 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.18□□□□□ -2.38
COL6A3P12111 RNU5D-1-201ENST00000363299 116 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 RNU6-1155P-201ENST00000363554 107 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 RNU6-271P-201ENST00000363858 105 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 RNU6-1074P-201ENST00000383995 104 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 SNORA32.3-201ENST00000384772 121 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC0.18□□□□□ -2.38
COL6A3P12111 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.18□□□□□ -2.38
COL6A3P12111 AC096920.1-201ENST00000423991 241 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC0.18□□□□□ -2.38
COL6A3P12111 AL365496.1-201ENST00000426885 215 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC0.18□□□□□ -2.38
COL6A3P12111 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC0.18□□□□□ -2.38
COL6A3P12111 AC016065.2-201ENST00000514530 444 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC0.18□□□□□ -2.38
COL6A3P12111 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC0.18□□□□□ -2.38
COL6A3P12111 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC0.18□□□□□ -2.38
COL6A3P12111 MIR548Y-201ENST00000582739 110 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 AC018618.2-201ENST00000604770 446 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 AC018638.7-201ENST00000605836 1114 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 MIR7157-201ENST00000635801 60 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 SNORA4.1-201ENST00000364263 144 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 RNU2-21P-201ENST00000410368 188 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 AC006548.1-201ENST00000427470 102 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 MRPL42P4-201ENST00000453267 443 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 AL359385.1-201ENST00000456509 365 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 RNU6-420P-201ENST00000458780 107 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.18□□□□□ -2.38
COL6A3P12111 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC0.18□□□□□ -2.38
COL6A3P12111 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.18□□□□□ -2.38
COL6A3P12111 AC021171.1-201ENST00000603137 706 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 AP003400.5-201ENST00000624827 617 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 CR381572.1-201ENST00000625098 102 ntBASIC0.18□□□□□ -2.38
COL6A3P12111 AL513185.3-201ENST00000433335 1300 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms