Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SNORA31.19-201ENST00000517079 126 ntBASIC1.28□□□□□ -2.2
APOEP02649 AC090821.2-201ENST00000523552 176 ntBASIC1.28□□□□□ -2.2
APOEP02649 COPS8P3-201ENST00000526024 482 ntBASIC1.28□□□□□ -2.2
APOEP02649 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.2
APOEP02649 AC004987.4-201ENST00000603383 338 ntBASIC1.28□□□□□ -2.2
APOEP02649 AC006270.3-201ENST00000605967 1036 ntBASIC1.28□□□□□ -2.2
APOEP02649 AL022345.1-201ENST00000607292 135 ntBASIC1.28□□□□□ -2.2
APOEP02649 AC012360.2-201ENST00000609349 391 ntBASIC1.28□□□□□ -2.2
APOEP02649 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.28□□□□□ -2.2
APOEP02649 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.28□□□□□ -2.2
APOEP02649 AC068880.4-201ENST00000623082 495 ntBASIC1.28□□□□□ -2.2
APOEP02649 PCMTD1P7-201ENST00000634506 357 ntBASIC1.28□□□□□ -2.2
APOEP02649 TEX21P-201ENST00000447107 1476 ntBASIC1.28□□□□□ -2.2
APOEP02649 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
APOEP02649 RBBP8P1-201ENST00000449447 1844 ntBASIC1.27□□□□□ -2.21
APOEP02649 ZNF680P1-201ENST00000436625 1469 ntBASIC1.27□□□□□ -2.21
APOEP02649 MTND5P33-201ENST00000571250 1450 ntBASIC1.27□□□□□ -2.21
APOEP02649 RNU6-858P-201ENST00000362436 107 ntBASIC1.27□□□□□ -2.21
APOEP02649 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
APOEP02649 RNU6-701P-201ENST00000384059 107 ntBASIC1.27□□□□□ -2.21
APOEP02649 RNU2-36P-201ENST00000410361 191 ntBASIC1.27□□□□□ -2.21
APOEP02649 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
APOEP02649 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC1.27□□□□□ -2.21
APOEP02649 AL022400.1-201ENST00000423946 935 ntBASIC1.27□□□□□ -2.21
APOEP02649 SNRPEP7-201ENST00000438350 220 ntBASIC1.27□□□□□ -2.21
APOEP02649 MTND4P25-201ENST00000441039 533 ntBASIC1.27□□□□□ -2.21
APOEP02649 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.27□□□□□ -2.21
APOEP02649 AP000542.1-201ENST00000448473 371 ntBASIC1.27□□□□□ -2.21
APOEP02649 AL590365.1-201ENST00000450788 243 ntBASIC1.27□□□□□ -2.21
APOEP02649 AC108078.2-201ENST00000510750 236 ntBASIC1.27□□□□□ -2.21
APOEP02649 RNVU1-2-201ENST00000516326 135 ntBASIC1.27□□□□□ -2.21
APOEP02649 AP003355.1-201ENST00000518956 587 ntBASIC1.27□□□□□ -2.21
APOEP02649 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.27□□□□□ -2.21
APOEP02649 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.27□□□□□ -2.21
APOEP02649 AC025678.1-201ENST00000567861 338 ntBASIC1.27□□□□□ -2.21
APOEP02649 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC1.27□□□□□ -2.21
APOEP02649 CYP2C61P-201ENST00000604072 290 ntBASIC1.27□□□□□ -2.21
APOEP02649 AL133445.2-201ENST00000611191 527 ntBASIC1.27□□□□□ -2.21
APOEP02649 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.27□□□□□ -2.21
APOEP02649 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
APOEP02649 RNU4-91P-201ENST00000364778 135 ntBASIC1.26□□□□□ -2.21
APOEP02649 RNU6-939P-201ENST00000384634 107 ntBASIC1.26□□□□□ -2.21
APOEP02649 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC1.26□□□□□ -2.21
APOEP02649 RNU6-321P-201ENST00000410912 106 ntBASIC1.26□□□□□ -2.21
APOEP02649 AL121594.1-201ENST00000475906 575 ntBASIC1.26□□□□□ -2.21
APOEP02649 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
APOEP02649 TRMT112P2-201ENST00000512910 132 ntBASIC1.26□□□□□ -2.21
APOEP02649 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.26□□□□□ -2.21
APOEP02649 RN7SKP179-201ENST00000516126 217 ntBASIC1.26□□□□□ -2.21
APOEP02649 RNU6-965P-201ENST00000516721 96 ntBASIC1.26□□□□□ -2.21
APOEP02649 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.26□□□□□ -2.21
APOEP02649 AL136520.1-202ENST00000555494 763 ntBASIC1.26□□□□□ -2.21
APOEP02649 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC1.26□□□□□ -2.21
APOEP02649 BNIP3P9-201ENST00000603714 553 ntBASIC1.26□□□□□ -2.21
APOEP02649 AL512506.1-201ENST00000613918 449 ntBASIC1.26□□□□□ -2.21
APOEP02649 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.26□□□□□ -2.21
APOEP02649 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.26□□□□□ -2.21
APOEP02649 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.26□□□□□ -2.21
APOEP02649 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
APOEP02649 RNU6-944P-201ENST00000364023 107 ntBASIC1.25□□□□□ -2.21
APOEP02649 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
APOEP02649 RPS15AP12-201ENST00000419498 388 ntBASIC1.25□□□□□ -2.21
APOEP02649 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC1.25□□□□□ -2.21
APOEP02649 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.25□□□□□ -2.21
APOEP02649 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC1.25□□□□□ -2.21
APOEP02649 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC1.25□□□□□ -2.21
APOEP02649 AL078601.1-201ENST00000444542 271 ntBASIC1.25□□□□□ -2.21
APOEP02649 PAXBP1P1-201ENST00000449315 447 ntBASIC1.25□□□□□ -2.21
APOEP02649 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.25□□□□□ -2.21
APOEP02649 RPL39P36-201ENST00000490784 156 ntBASIC1.25□□□□□ -2.21
APOEP02649 AC005840.1-201ENST00000498412 377 ntBASIC1.25□□□□□ -2.21
APOEP02649 AC008837.2-201ENST00000513076 418 ntBASIC1.25□□□□□ -2.21
APOEP02649 MTCO3P27-201ENST00000514397 196 ntBASIC1.25□□□□□ -2.21
APOEP02649 RNU6-143P-201ENST00000516942 93 ntBASIC1.25□□□□□ -2.21
APOEP02649 RRN3P3-201ENST00000549207 578 ntBASIC1.25□□□□□ -2.21
APOEP02649 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC1.25□□□□□ -2.21
APOEP02649 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.25□□□□□ -2.21
APOEP02649 AL358072.1-201ENST00000604156 575 ntBASIC1.25□□□□□ -2.21
APOEP02649 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.25□□□□□ -2.21
APOEP02649 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
APOEP02649 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
APOEP02649 Y_RNA.67-201ENST00000362870 100 ntBASIC1.24□□□□□ -2.21
APOEP02649 RNU6-743P-201ENST00000364151 106 ntBASIC1.24□□□□□ -2.21
APOEP02649 SNORA40.2-201ENST00000390847 128 ntBASIC1.24□□□□□ -2.21
APOEP02649 SNORA40C-201ENST00000391285 128 ntBASIC1.24□□□□□ -2.21
APOEP02649 AL359704.1-201ENST00000411586 781 ntBASIC1.24□□□□□ -2.21
APOEP02649 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.24□□□□□ -2.21
APOEP02649 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC1.24□□□□□ -2.21
APOEP02649 RAC1P6-201ENST00000423911 575 ntBASIC1.24□□□□□ -2.21
APOEP02649 MTND5P25-201ENST00000430499 799 ntBASIC1.24□□□□□ -2.21
APOEP02649 NEFMP1-201ENST00000443423 1006 ntBASIC1.24□□□□□ -2.21
APOEP02649 MED28P2-201ENST00000475771 317 ntBASIC1.24□□□□□ -2.21
APOEP02649 AC022616.8-201ENST00000533569 253 ntBASIC1.24□□□□□ -2.21
APOEP02649 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.24□□□□□ -2.21
APOEP02649 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.24□□□□□ -2.21
APOEP02649 uc_338.15-201ENST00000615470 191 ntBASIC1.24□□□□□ -2.21
APOEP02649 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.24□□□□□ -2.21
APOEP02649 AL512643.1-201ENST00000635735 524 ntBASIC1.24□□□□□ -2.21
APOEP02649 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.24□□□□□ -2.21
APOEP02649 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms