Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 UBE3AP2-201ENST00000429033 2259 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 RNY1P16-201ENST00000363063 111 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 Y_RNA.364-201ENST00000365532 101 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 U1.1-201ENST00000384101 164 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 RNU6-198P-201ENST00000384258 104 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 SNORD116-20-201ENST00000384529 92 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 AC243428.1-201ENST00000421099 264 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 FO393415.2-201ENST00000480085 343 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 AC022447.4-201ENST00000504053 364 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 AC116655.1-201ENST00000508324 901 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 CBX3P8-201ENST00000532412 525 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 CR383656.8-201ENST00000549046 145 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 7SK.7-201ENST00000603504 247 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 AC024581.2-201ENST00000619986 252 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 AC007496.3-201ENST00000624987 3443 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 RNU6-942P-201ENST00000363002 107 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 Y_RNA.148-201ENST00000363557 117 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 SNORA63C-201ENST00000364578 129 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 RNU6-1032P-201ENST00000384100 107 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 Y_RNA.577-201ENST00000384794 101 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 RN7SKP202-201ENST00000410439 330 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 AP000275.1-201ENST00000411943 390 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 NUP35P1-201ENST00000422734 947 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 AC005300.1-201ENST00000428401 373 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 AL353997.1-201ENST00000432936 108 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 RPL21P23-201ENST00000446654 460 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 RPS3AP46-201ENST00000448352 682 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 AC010099.1-201ENST00000455434 375 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 RNU7-23P-201ENST00000459465 62 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 MRPL42P6-201ENST00000486397 371 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 GNAI2P1-201ENST00000541815 315 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 HMGN2P15-201ENST00000585707 270 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 HMGB1P24-202ENST00000615653 685 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 AC090617.7-201ENST00000623952 126 ntBASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.8□□□□□ -1.8
TRIM39Q9HCM9 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 ATP5HP2-201ENST00000433885 485 ntBASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 AC015911.1-201ENST00000495111 156 ntBASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 RNU7-4P-201ENST00000516961 62 ntBASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 AC006199.1-201ENST00000548728 219 ntBASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 AC116312.1-201ENST00000606841 314 ntBASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 MIR486-1-201ENST00000612171 68 ntBASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 AL138825.1-201ENST00000618587 192 ntBASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 U7.8-201ENST00000619968 63 ntBASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 MIR3529-201ENST00000637713 78 ntBASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 AC004944.1-201ENST00000517807 3059 ntBASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM39Q9HCM9 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 AC007256.1-201ENST00000392253 2765 ntBASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 Y_RNA.39-201ENST00000362620 98 ntBASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 Y_RNA.48-201ENST00000362710 103 ntBASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 Y_RNA.158-201ENST00000363651 101 ntBASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 SNORD6-201ENST00000365444 73 ntBASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 RNY1P14-201ENST00000384426 108 ntBASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 Y_RNA.533-201ENST00000384596 114 ntBASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 RNU6-700P-201ENST00000391043 107 ntBASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 MRPL42P3-201ENST00000401492 326 ntBASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 RN7SKP156-201ENST00000410308 342 ntBASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 AC245291.1-201ENST00000419501 328 ntBASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.78□□□□□ -1.8
TRIM39Q9HCM9 HMGN2P20-201ENST00000437531 273 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms