Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL596276.1-201ENST00000434465 418 ntBASIC3.16□□□□□ -1.9
CTCFP49711 RPL39P40-201ENST00000445481 146 ntBASIC3.16□□□□□ -1.9
CTCFP49711 RNU7-63P-201ENST00000459054 62 ntBASIC3.16□□□□□ -1.9
CTCFP49711 RPS27AP10-201ENST00000496103 208 ntBASIC3.16□□□□□ -1.9
CTCFP49711 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.16□□□□□ -1.9
CTCFP49711 RN7SKP43-201ENST00000516173 320 ntBASIC3.16□□□□□ -1.9
CTCFP49711 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.16□□□□□ -1.9
CTCFP49711 AC104383.1-201ENST00000530297 370 ntBASIC3.16□□□□□ -1.9
CTCFP49711 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC3.16□□□□□ -1.9
CTCFP49711 MIR1273D-201ENST00000577266 86 ntBASIC3.16□□□□□ -1.9
CTCFP49711 MIR4703-201ENST00000577728 79 ntBASIC3.16□□□□□ -1.9
CTCFP49711 MIR1273C-201ENST00000578669 77 ntBASIC3.16□□□□□ -1.9
CTCFP49711 MTATP6P3-201ENST00000581686 676 ntBASIC3.16□□□□□ -1.9
CTCFP49711 AC023043.2-201ENST00000589678 1026 ntBASIC3.16□□□□□ -1.9
CTCFP49711 AC010620.2-201ENST00000600135 313 ntBASIC3.16□□□□□ -1.9
CTCFP49711 AP001596.2-201ENST00000608410 312 ntBASIC3.16□□□□□ -1.9
CTCFP49711 AC122108.2-201ENST00000611946 526 ntBASIC3.16□□□□□ -1.9
CTCFP49711 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
CTCFP49711 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CTCFP49711 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.16□□□□□ -1.9
CTCFP49711 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CTCFP49711 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
CTCFP49711 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
CTCFP49711 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.15□□□□□ -1.9
CTCFP49711 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
CTCFP49711 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
CTCFP49711 Y_RNA.505-201ENST00000384489 102 ntBASIC3.15□□□□□ -1.91
CTCFP49711 RNU6-780P-201ENST00000391030 104 ntBASIC3.15□□□□□ -1.91
CTCFP49711 RNA5SP354-201ENST00000391247 136 ntBASIC3.15□□□□□ -1.91
CTCFP49711 AL591416.1-201ENST00000404015 867 ntBASIC3.15□□□□□ -1.91
CTCFP49711 RNA5SP274-201ENST00000410484 108 ntBASIC3.15□□□□□ -1.91
CTCFP49711 RPL26P27-201ENST00000414397 437 ntBASIC3.15□□□□□ -1.91
CTCFP49711 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CTCFP49711 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.15□□□□□ -1.91
CTCFP49711 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.15□□□□□ -1.91
CTCFP49711 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC3.15□□□□□ -1.91
CTCFP49711 AL606489.2-201ENST00000433886 234 ntBASIC3.15□□□□□ -1.91
CTCFP49711 AC027673.1-201ENST00000456245 405 ntBASIC3.15□□□□□ -1.91
CTCFP49711 RPL26P9-201ENST00000457466 433 ntBASIC3.15□□□□□ -1.91
CTCFP49711 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.15□□□□□ -1.91
CTCFP49711 RPL36AP51-201ENST00000487216 318 ntBASIC3.15□□□□□ -1.91
CTCFP49711 EIF4EP3-201ENST00000498782 656 ntBASIC3.15□□□□□ -1.91
CTCFP49711 AC114786.4-201ENST00000508771 728 ntBASIC3.15□□□□□ -1.91
CTCFP49711 AC116337.1-201ENST00000509680 687 ntBASIC3.15□□□□□ -1.91
CTCFP49711 AC009646.1-201ENST00000510455 318 ntBASIC3.15□□□□□ -1.91
CTCFP49711 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.15□□□□□ -1.91
CTCFP49711 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.15□□□□□ -1.91
CTCFP49711 AC105417.1-201ENST00000514691 285 ntBASIC3.15□□□□□ -1.91
CTCFP49711 SNORA40.12-201ENST00000516329 111 ntBASIC3.15□□□□□ -1.91
CTCFP49711 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.15□□□□□ -1.91
CTCFP49711 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.15□□□□□ -1.91
CTCFP49711 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.15□□□□□ -1.91
CTCFP49711 TPRKBP2-201ENST00000565969 475 ntBASIC3.15□□□□□ -1.91
CTCFP49711 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.15□□□□□ -1.91
CTCFP49711 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.15□□□□□ -1.91
CTCFP49711 DEFB131E-202ENST00000602581 683 ntBASIC3.15□□□□□ -1.91
CTCFP49711 AL670379.4-201ENST00000605279 254 ntBASIC3.15□□□□□ -1.91
CTCFP49711 AC013562.2-201ENST00000611632 603 ntBASIC3.15□□□□□ -1.91
CTCFP49711 AC024940.5-201ENST00000622889 474 ntBASIC3.15□□□□□ -1.91
CTCFP49711 MTND4P35-201ENST00000604257 1375 ntBASIC3.14□□□□□ -1.91
CTCFP49711 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
CTCFP49711 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
CTCFP49711 NACAP2-201ENST00000318548 624 ntBASIC3.14□□□□□ -1.91
CTCFP49711 Y_RNA.33-201ENST00000362591 102 ntBASIC3.14□□□□□ -1.91
CTCFP49711 RNU6-1287P-201ENST00000362914 107 ntBASIC3.14□□□□□ -1.91
CTCFP49711 RNU6-1060P-201ENST00000384664 107 ntBASIC3.14□□□□□ -1.91
CTCFP49711 RNU6-192P-201ENST00000391253 100 ntBASIC3.14□□□□□ -1.91
CTCFP49711 RNU6-1025P-201ENST00000410629 104 ntBASIC3.14□□□□□ -1.91
CTCFP49711 RNU6-193P-201ENST00000410977 107 ntBASIC3.14□□□□□ -1.91
CTCFP49711 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.14□□□□□ -1.91
CTCFP49711 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.14□□□□□ -1.91
CTCFP49711 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.14□□□□□ -1.91
CTCFP49711 TIMM9P3-201ENST00000428659 274 ntBASIC3.14□□□□□ -1.91
CTCFP49711 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CTCFP49711 BRK1P2-201ENST00000442875 223 ntBASIC3.14□□□□□ -1.91
CTCFP49711 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.14□□□□□ -1.91
CTCFP49711 MTND1P18-201ENST00000448191 573 ntBASIC3.14□□□□□ -1.91
CTCFP49711 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.14□□□□□ -1.91
CTCFP49711 CACYBPP2-201ENST00000453625 678 ntBASIC3.14□□□□□ -1.91
CTCFP49711 SRRM1P2-201ENST00000464531 1192 ntBASIC3.14□□□□□ -1.91
CTCFP49711 GMFBP1-201ENST00000467831 427 ntBASIC3.14□□□□□ -1.91
CTCFP49711 AC022493.1-201ENST00000492984 337 ntBASIC3.14□□□□□ -1.91
CTCFP49711 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.14□□□□□ -1.91
CTCFP49711 AC026801.1-201ENST00000497178 464 ntBASIC3.14□□□□□ -1.91
CTCFP49711 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.14□□□□□ -1.91
CTCFP49711 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.14□□□□□ -1.91
CTCFP49711 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.14□□□□□ -1.91
CTCFP49711 AC113155.1-201ENST00000511141 769 ntBASIC3.14□□□□□ -1.91
CTCFP49711 AC025755.1-201ENST00000521306 278 ntBASIC3.14□□□□□ -1.91
CTCFP49711 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.14□□□□□ -1.91
CTCFP49711 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.14□□□□□ -1.91
CTCFP49711 AL355598.1-201ENST00000604169 202 ntBASIC3.14□□□□□ -1.91
CTCFP49711 AC107871.2-201ENST00000612894 502 ntBASIC3.14□□□□□ -1.91
CTCFP49711 CR381653.2-201ENST00000624041 768 ntBASIC3.14□□□□□ -1.91
CTCFP49711 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.14□□□□□ -1.91
CTCFP49711 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CTCFP49711 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.14□□□□□ -1.91
CTCFP49711 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.14□□□□□ -1.91
CTCFP49711 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.14□□□□□ -1.91
CTCFP49711 AC006020.1-201ENST00000420179 1854 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms