Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.64□□□□□ -1.83
MSX2P35548 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
MSX2P35548 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
MSX2P35548 MIR412-201ENST00000362142 91 ntBASIC3.63□□□□□ -1.83
MSX2P35548 SNORD14B-201ENST00000364533 90 ntBASIC3.63□□□□□ -1.83
MSX2P35548 RNU6-1093P-201ENST00000391194 107 ntBASIC3.63□□□□□ -1.83
MSX2P35548 MIR1193-201ENST00000408109 78 ntBASIC3.63□□□□□ -1.83
MSX2P35548 Z85995.1-201ENST00000415547 335 ntBASIC3.63□□□□□ -1.83
MSX2P35548 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.63□□□□□ -1.83
MSX2P35548 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.63□□□□□ -1.83
MSX2P35548 SNORA40.15-201ENST00000516884 107 ntBASIC3.63□□□□□ -1.83
MSX2P35548 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.63□□□□□ -1.83
MSX2P35548 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.63□□□□□ -1.83
MSX2P35548 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.63□□□□□ -1.83
MSX2P35548 AC026470.2-201ENST00000561492 181 ntBASIC3.63□□□□□ -1.83
MSX2P35548 AL390123.1-201ENST00000603216 237 ntBASIC3.63□□□□□ -1.83
MSX2P35548 AP000787.2-201ENST00000604432 568 ntBASIC3.63□□□□□ -1.83
MSX2P35548 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.63□□□□□ -1.83
MSX2P35548 AC130454.1-201ENST00000622948 401 ntBASIC3.63□□□□□ -1.83
MSX2P35548 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.63□□□□□ -1.83
MSX2P35548 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.63□□□□□ -1.83
MSX2P35548 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
MSX2P35548 AF127577.6-201ENST00000623352 2191 ntBASIC3.63□□□□□ -1.83
MSX2P35548 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
MSX2P35548 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
MSX2P35548 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSX2P35548 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
MSX2P35548 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
MSX2P35548 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
MSX2P35548 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.62□□□□□ -1.83
MSX2P35548 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSX2P35548 Y_RNA.105-201ENST00000363182 111 ntBASIC3.62□□□□□ -1.83
MSX2P35548 RNU6-827P-201ENST00000365553 106 ntBASIC3.62□□□□□ -1.83
MSX2P35548 Y_RNA.477-201ENST00000384352 108 ntBASIC3.62□□□□□ -1.83
MSX2P35548 RNU6-130P-201ENST00000411112 103 ntBASIC3.62□□□□□ -1.83
MSX2P35548 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.62□□□□□ -1.83
MSX2P35548 AL117339.3-201ENST00000418733 162 ntBASIC3.62□□□□□ -1.83
MSX2P35548 AC092423.1-201ENST00000430165 186 ntBASIC3.62□□□□□ -1.83
MSX2P35548 AL159987.2-201ENST00000432754 307 ntBASIC3.62□□□□□ -1.83
MSX2P35548 SNORA71B-202ENST00000439232 272 ntBASIC3.62□□□□□ -1.83
MSX2P35548 AL590664.1-201ENST00000448065 339 ntBASIC3.62□□□□□ -1.83
MSX2P35548 NDUFB1P2-201ENST00000449477 176 ntBASIC3.62□□□□□ -1.83
MSX2P35548 MTND4LP30-201ENST00000454092 297 ntBASIC3.62□□□□□ -1.83
MSX2P35548 LINC01399-202ENST00000458450 244 ntBASIC3.62□□□□□ -1.83
MSX2P35548 RPL39P38-201ENST00000467018 153 ntBASIC3.62□□□□□ -1.83
MSX2P35548 RPL23AP45-201ENST00000476406 468 ntBASIC3.62□□□□□ -1.83
MSX2P35548 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.62□□□□□ -1.83
MSX2P35548 RAC1P2-201ENST00000511164 579 ntBASIC3.62□□□□□ -1.83
MSX2P35548 SCARNA15.2-201ENST00000516409 127 ntBASIC3.62□□□□□ -1.83
MSX2P35548 AC034114.1-201ENST00000520293 285 ntBASIC3.62□□□□□ -1.83
MSX2P35548 HMGB1P14-201ENST00000557424 591 ntBASIC3.62□□□□□ -1.83
MSX2P35548 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.62□□□□□ -1.83
MSX2P35548 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.62□□□□□ -1.83
MSX2P35548 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.62□□□□□ -1.83
MSX2P35548 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
MSX2P35548 AL137849.1-201ENST00000604767 169 ntBASIC3.62□□□□□ -1.83
MSX2P35548 MIR8076-201ENST00000611401 83 ntBASIC3.62□□□□□ -1.83
MSX2P35548 AL110115.1-201ENST00000614396 364 ntBASIC3.62□□□□□ -1.83
MSX2P35548 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.62□□□□□ -1.83
MSX2P35548 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.62□□□□□ -1.83
MSX2P35548 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.62□□□□□ -1.83
MSX2P35548 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.62□□□□□ -1.83
MSX2P35548 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
MSX2P35548 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSX2P35548 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSX2P35548 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
MSX2P35548 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSX2P35548 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.61□□□□□ -1.83
MSX2P35548 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
MSX2P35548 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
MSX2P35548 MTND5P9-201ENST00000503854 1755 ntBASIC3.61□□□□□ -1.83
MSX2P35548 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.61□□□□□ -1.83
MSX2P35548 RNU6-283P-201ENST00000364788 107 ntBASIC3.61□□□□□ -1.83
MSX2P35548 SNORA20.1-201ENST00000364790 130 ntBASIC3.61□□□□□ -1.83
MSX2P35548 RNU6-708P-201ENST00000384217 107 ntBASIC3.61□□□□□ -1.83
MSX2P35548 RNU6-611P-201ENST00000384276 104 ntBASIC3.61□□□□□ -1.83
MSX2P35548 MIR521-1-201ENST00000384902 87 ntBASIC3.61□□□□□ -1.83
MSX2P35548 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.61□□□□□ -1.83
MSX2P35548 Y_RNA.592-201ENST00000410274 109 ntBASIC3.61□□□□□ -1.83
MSX2P35548 RNU6-121P-201ENST00000410525 99 ntBASIC3.61□□□□□ -1.83
MSX2P35548 RN7SKP27-201ENST00000410684 333 ntBASIC3.61□□□□□ -1.83
MSX2P35548 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.61□□□□□ -1.83
MSX2P35548 MTCO3P19-201ENST00000415864 321 ntBASIC3.61□□□□□ -1.83
MSX2P35548 YPEL5P1-201ENST00000419731 367 ntBASIC3.61□□□□□ -1.83
MSX2P35548 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.61□□□□□ -1.83
MSX2P35548 AC004975.1-201ENST00000428733 208 ntBASIC3.61□□□□□ -1.83
MSX2P35548 NDUFB1P1-201ENST00000435191 180 ntBASIC3.61□□□□□ -1.83
MSX2P35548 RPEP5-201ENST00000441137 268 ntBASIC3.61□□□□□ -1.83
MSX2P35548 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.61□□□□□ -1.83
MSX2P35548 RPS20P22-201ENST00000473700 357 ntBASIC3.61□□□□□ -1.83
MSX2P35548 AL132838.2-201ENST00000492041 314 ntBASIC3.61□□□□□ -1.83
MSX2P35548 RPL7P47-201ENST00000497299 556 ntBASIC3.61□□□□□ -1.83
MSX2P35548 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.61□□□□□ -1.83
MSX2P35548 AC025465.3-201ENST00000510570 311 ntBASIC3.61□□□□□ -1.83
MSX2P35548 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.61□□□□□ -1.83
MSX2P35548 AC026402.1-201ENST00000513642 170 ntBASIC3.61□□□□□ -1.83
MSX2P35548 RNU1-61P-201ENST00000516107 151 ntBASIC3.61□□□□□ -1.83
MSX2P35548 SNORA70.16-201ENST00000516390 95 ntBASIC3.61□□□□□ -1.83
MSX2P35548 RN7SKP209-201ENST00000516888 304 ntBASIC3.61□□□□□ -1.83
MSX2P35548 NDUFB9P3-201ENST00000521269 501 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms