Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC0.29□□□□□ -2.36
SPTA1P02549 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC0.29□□□□□ -2.36
SPTA1P02549 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.29□□□□□ -2.36
SPTA1P02549 HSPE1P13-201ENST00000451143 297 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.29□□□□□ -2.36
SPTA1P02549 AC015688.2-201ENST00000584523 262 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 AC012669.1-201ENST00000603209 283 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 AC005021.1-201ENST00000608730 355 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 MIR8074-201ENST00000615081 81 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 Z75746.1-201ENST00000440243 2080 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 MIR1303-201ENST00000408625 86 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 AC060773.1-201ENST00000421698 310 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.29□□□□□ -2.36
SPTA1P02549 AC108729.1-201ENST00000487812 947 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 COX6CP6-201ENST00000490840 228 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC0.29□□□□□ -2.36
SPTA1P02549 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.29□□□□□ -2.36
SPTA1P02549 AC022447.1-201ENST00000515358 464 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.29□□□□□ -2.36
SPTA1P02549 AP003122.4-201ENST00000530980 758 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 AL049870.4-201ENST00000555741 486 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC0.29□□□□□ -2.36
SPTA1P02549 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC0.29□□□□□ -2.36
SPTA1P02549 NIFKP6-201ENST00000598115 845 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 Z99571.1-201ENST00000636677 394 ntBASIC0.29□□□□□ -2.36
SPTA1P02549 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.28□□□□□ -2.36
SPTA1P02549 RPL22P22-201ENST00000395439 379 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 AL117342.1-201ENST00000404861 406 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.28□□□□□ -2.36
SPTA1P02549 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC0.28□□□□□ -2.36
SPTA1P02549 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC0.28□□□□□ -2.36
SPTA1P02549 ARPC3P5-201ENST00000448802 534 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.28□□□□□ -2.36
SPTA1P02549 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.28□□□□□ -2.36
SPTA1P02549 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC0.28□□□□□ -2.36
SPTA1P02549 HMGB1P36-201ENST00000487709 576 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC0.28□□□□□ -2.36
SPTA1P02549 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.28□□□□□ -2.36
SPTA1P02549 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC0.28□□□□□ -2.36
SPTA1P02549 MIR4667-201ENST00000578933 66 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 AL121652.1-201ENST00000608851 448 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 MIR8065-201ENST00000620577 100 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 AC073308.1-201ENST00000623696 305 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 RNU6-374P-201ENST00000364146 108 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 RNU1-36P-201ENST00000365130 165 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 AC092634.2-201ENST00000428146 1010 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC0.28□□□□□ -2.36
SPTA1P02549 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC0.28□□□□□ -2.36
SPTA1P02549 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC0.28□□□□□ -2.36
SPTA1P02549 RNU6-1256P-201ENST00000516539 103 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 AC090142.3-201ENST00000519012 385 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.28□□□□□ -2.36
SPTA1P02549 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC0.28□□□□□ -2.36
SPTA1P02549 ADAM3B-201ENST00000569937 840 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 AL137246.1-201ENST00000607072 977 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 AC011939.3-201ENST00000613686 466 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 uc_338.15-201ENST00000615470 191 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 ZNF663P-202ENST00000641770 1131 ntBASIC0.28□□□□□ -2.36
SPTA1P02549 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC0.28□□□□□ -2.36
SPTA1P02549 RNU6-167P-201ENST00000384292 106 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 RNA5SP212-201ENST00000391223 107 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 DSTNP4-201ENST00000399472 474 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 RNU2-36P-201ENST00000410361 191 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 AC092573.2-201ENST00000434546 243 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 MTND1P16-201ENST00000465177 898 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC0.27□□□□□ -2.37
SPTA1P02549 SNORD116-28-201ENST00000516123 91 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC0.27□□□□□ -2.37
SPTA1P02549 CYCSP27-201ENST00000527643 293 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.27□□□□□ -2.37
SPTA1P02549 AC100812.1-201ENST00000607622 580 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 AC021851.1-201ENST00000608537 1082 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 AC018926.3-201ENST00000618841 406 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 Y_RNA.18-201ENST00000362461 102 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 MIR618-201ENST00000385287 98 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 ZNF92P1Y-201ENST00000415010 1191 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 RPL23AP54-201ENST00000495129 419 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC0.27□□□□□ -2.37
SPTA1P02549 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.27□□□□□ -2.37
SPTA1P02549 RNU4ATAC10P-201ENST00000516967 122 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 MAL2-206ENST00000522187 547 ntTSL 4 BASIC0.27□□□□□ -2.37
SPTA1P02549 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
SPTA1P02549 AC021739.1-201ENST00000559631 174 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.27□□□□□ -2.37
SPTA1P02549 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.27□□□□□ -2.37
SPTA1P02549 AL355472.4-201ENST00000610233 626 ntBASIC0.27□□□□□ -2.37
SPTA1P02549 AL355615.1-201ENST00000406187 641 ntBASIC0.26□□□□□ -2.37
SPTA1P02549 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.26□□□□□ -2.37
SPTA1P02549 AC097463.2-201ENST00000421074 142 ntBASIC0.26□□□□□ -2.37
SPTA1P02549 MTCO1P44-201ENST00000441935 243 ntBASIC0.26□□□□□ -2.37
SPTA1P02549 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC0.26□□□□□ -2.37
SPTA1P02549 SNORD124-201ENST00000459577 104 ntBASIC0.26□□□□□ -2.37
SPTA1P02549 AC111000.5-201ENST00000506559 1178 ntBASIC0.26□□□□□ -2.37
SPTA1P02549 MTCYBP16-201ENST00000509187 1129 ntBASIC0.26□□□□□ -2.37
SPTA1P02549 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.26□□□□□ -2.37
SPTA1P02549 AC004492.1-201ENST00000607036 742 ntBASIC0.26□□□□□ -2.37
SPTA1P02549 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.26□□□□□ -2.37
SPTA1P02549 AC092125.1-201ENST00000562568 1995 ntBASIC0.26□□□□□ -2.37
SPTA1P02549 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC0.26□□□□□ -2.37
SPTA1P02549 SNORA25-201ENST00000384384 134 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms