Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.55□□□□□ -2
SIX3O95343 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.55□□□□□ -2
SIX3O95343 AC008571.1-201ENST00000467232 300 ntBASIC2.55□□□□□ -2
SIX3O95343 MED28P2-201ENST00000475771 317 ntBASIC2.55□□□□□ -2
SIX3O95343 AC140059.1-201ENST00000489238 361 ntBASIC2.55□□□□□ -2
SIX3O95343 RPL36AP21-201ENST00000490372 323 ntBASIC2.55□□□□□ -2
SIX3O95343 TBCAP3-201ENST00000512475 312 ntBASIC2.55□□□□□ -2
SIX3O95343 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.55□□□□□ -2
SIX3O95343 CKS1BP7-201ENST00000522230 235 ntBASIC2.55□□□□□ -2
SIX3O95343 FAM92A1P1-201ENST00000528023 890 ntBASIC2.55□□□□□ -2
SIX3O95343 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.55□□□□□ -2
SIX3O95343 AC006362.1-201ENST00000567392 174 ntBASIC2.55□□□□□ -2
SIX3O95343 MIR5571-201ENST00000577998 113 ntBASIC2.55□□□□□ -2
SIX3O95343 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.55□□□□□ -2
SIX3O95343 MIR5194-201ENST00000582634 120 ntBASIC2.55□□□□□ -2
SIX3O95343 MIR4658-201ENST00000584344 65 ntBASIC2.55□□□□□ -2
SIX3O95343 AC010620.1-201ENST00000601088 1102 ntBASIC2.55□□□□□ -2
SIX3O95343 AC008945.2-201ENST00000606056 604 ntBASIC2.55□□□□□ -2
SIX3O95343 AC025754.2-201ENST00000606491 432 ntBASIC2.55□□□□□ -2
SIX3O95343 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.55□□□□□ -2
SIX3O95343 AC005332.10-201ENST00000612725 619 ntBASIC2.55□□□□□ -2
SIX3O95343 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.55□□□□□ -2
SIX3O95343 AL590808.1-201ENST00000618696 141 ntBASIC2.55□□□□□ -2
SIX3O95343 SCARNA4-202ENST00000625402 129 ntBASIC2.55□□□□□ -2
SIX3O95343 MIR3529-201ENST00000637713 78 ntBASIC2.55□□□□□ -2
SIX3O95343 AC062016.1-201ENST00000355719 319 ntBASIC2.54□□□□□ -2
SIX3O95343 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.54□□□□□ -2
SIX3O95343 USP9YP20-201ENST00000419224 558 ntBASIC2.54□□□□□ -2
SIX3O95343 MTCO2P16-201ENST00000436962 677 ntBASIC2.54□□□□□ -2
SIX3O95343 AC079448.1-201ENST00000449377 373 ntBASIC2.54□□□□□ -2
SIX3O95343 NDUFB1P2-201ENST00000449477 176 ntBASIC2.54□□□□□ -2
SIX3O95343 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.54□□□□□ -2
SIX3O95343 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.54□□□□□ -2
SIX3O95343 AL162395.1-201ENST00000457882 422 ntBASIC2.54□□□□□ -2
SIX3O95343 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.54□□□□□ -2
SIX3O95343 RN7SKP132-201ENST00000516001 208 ntBASIC2.54□□□□□ -2
SIX3O95343 RNA5SP458-201ENST00000516188 119 ntBASIC2.54□□□□□ -2
SIX3O95343 MIR892C-201ENST00000516410 77 ntBASIC2.54□□□□□ -2
SIX3O95343 RNA5SP367-201ENST00000516557 118 ntBASIC2.54□□□□□ -2
SIX3O95343 RNU6-1178P-201ENST00000516674 107 ntBASIC2.54□□□□□ -2
SIX3O95343 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.54□□□□□ -2
SIX3O95343 AL356057.1-201ENST00000533798 831 ntBASIC2.54□□□□□ -2
SIX3O95343 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.54□□□□□ -2
SIX3O95343 AC004486.1-201ENST00000546846 233 ntBASIC2.54□□□□□ -2
SIX3O95343 MIR4528-201ENST00000577763 90 ntBASIC2.54□□□□□ -2
SIX3O95343 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.54□□□□□ -2
SIX3O95343 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.54□□□□□ -2
SIX3O95343 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.54□□□□□ -2
SIX3O95343 BNIP3P30-201ENST00000601184 574 ntBASIC2.54□□□□□ -2
SIX3O95343 AC016727.1-205ENST00000605437 569 ntBASIC2.54□□□□□ -2
SIX3O95343 RN7SKP299-201ENST00000606679 301 ntBASIC2.54□□□□□ -2
SIX3O95343 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.54□□□□□ -2
SIX3O95343 HMGB1P24-202ENST00000615653 685 ntBASIC2.54□□□□□ -2
SIX3O95343 AC011155.2-201ENST00000623202 216 ntBASIC2.54□□□□□ -2
SIX3O95343 AC009161.2-201ENST00000624626 138 ntBASIC2.54□□□□□ -2
SIX3O95343 AC090582.1-201ENST00000636321 199 ntBASIC2.54□□□□□ -2
SIX3O95343 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.54□□□□□ -2
SIX3O95343 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.54□□□□□ -2
SIX3O95343 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.53□□□□□ -2
SIX3O95343 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.53□□□□□ -2
SIX3O95343 OR4G2P-201ENST00000328113 903 ntBASIC2.53□□□□□ -2
SIX3O95343 SNORD114-19-201ENST00000363072 75 ntBASIC2.53□□□□□ -2
SIX3O95343 RNU4-48P-201ENST00000365559 182 ntBASIC2.53□□□□□ -2
SIX3O95343 RNU6-1029P-201ENST00000384109 107 ntBASIC2.53□□□□□ -2
SIX3O95343 RNU6-74P-201ENST00000384235 107 ntBASIC2.53□□□□□ -2
SIX3O95343 RNU6-72P-201ENST00000384285 79 ntBASIC2.53□□□□□ -2
SIX3O95343 Y_RNA.553-201ENST00000384670 102 ntBASIC2.53□□□□□ -2
SIX3O95343 RNU6-1072P-201ENST00000384703 107 ntBASIC2.53□□□□□ -2
SIX3O95343 RNU6-443P-201ENST00000384780 107 ntBASIC2.53□□□□□ -2
SIX3O95343 MIR764-201ENST00000390811 85 ntBASIC2.53□□□□□ -2
SIX3O95343 RNU6-550P-201ENST00000391057 101 ntBASIC2.53□□□□□ -2
SIX3O95343 RAP1BP3-201ENST00000407180 549 ntBASIC2.53□□□□□ -2
SIX3O95343 U6atac.2-201ENST00000408644 118 ntBASIC2.53□□□□□ -2
SIX3O95343 RNU2-63P-201ENST00000410792 194 ntBASIC2.53□□□□□ -2
SIX3O95343 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.53□□□□□ -2
SIX3O95343 CYCSP48-201ENST00000417124 323 ntBASIC2.53□□□□□ -2
SIX3O95343 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.53□□□□□ -2
SIX3O95343 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.53□□□□□ -2
SIX3O95343 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.53□□□□□ -2
SIX3O95343 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.53□□□□□ -2
SIX3O95343 AC245517.4-201ENST00000448601 281 ntBASIC2.53□□□□□ -2
SIX3O95343 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.53□□□□□ -2
SIX3O95343 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.53□□□□□ -2
SIX3O95343 AP000705.1-201ENST00000454567 350 ntBASIC2.53□□□□□ -2
SIX3O95343 AC073901.1-201ENST00000462471 408 ntBASIC2.53□□□□□ -2
SIX3O95343 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.53□□□□□ -2
SIX3O95343 AC098799.2-201ENST00000509466 868 ntBASIC2.53□□□□□ -2
SIX3O95343 Y_RNA.687-201ENST00000516558 91 ntBASIC2.53□□□□□ -2
SIX3O95343 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.53□□□□□ -2
SIX3O95343 RPL7P20-201ENST00000520308 745 ntBASIC2.53□□□□□ -2
SIX3O95343 AC105137.2-201ENST00000569073 466 ntBASIC2.53□□□□□ -2
SIX3O95343 AC093788.1-201ENST00000609356 927 ntBASIC2.53□□□□□ -2
SIX3O95343 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.53□□□□□ -2
SIX3O95343 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.53□□□□□ -2
SIX3O95343 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SIX3O95343 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SIX3O95343 MTND4P14-201ENST00000435799 1354 ntBASIC2.52□□□□□ -2.01
SIX3O95343 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.52□□□□□ -2.01
SIX3O95343 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.52□□□□□ -2.01
SIX3O95343 Y_RNA.796-201ENST00000364268 102 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms