Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
SKA1Q96BD8 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.98□□□□□ -1.93
SKA1Q96BD8 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
SKA1Q96BD8 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.98□□□□□ -1.93
SKA1Q96BD8 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 RNU6-942P-201ENST00000363002 107 ntBASIC2.97□□□□□ -1.93
SKA1Q96BD8 RNU6-843P-201ENST00000384454 104 ntBASIC2.97□□□□□ -1.93
SKA1Q96BD8 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 RNU2-9P-201ENST00000410194 145 ntBASIC2.97□□□□□ -1.93
SKA1Q96BD8 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 RPS3AP17-201ENST00000472594 777 ntBASIC2.97□□□□□ -1.93
SKA1Q96BD8 MTND3P25-201ENST00000509243 135 ntBASIC2.97□□□□□ -1.93
SKA1Q96BD8 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 RNU1-86P-201ENST00000516108 154 ntBASIC2.97□□□□□ -1.93
SKA1Q96BD8 RNU1-107P-201ENST00000516617 154 ntBASIC2.97□□□□□ -1.93
SKA1Q96BD8 RNU6-1178P-201ENST00000516674 107 ntBASIC2.97□□□□□ -1.93
SKA1Q96BD8 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 AC027176.1-201ENST00000560204 514 ntBASIC2.97□□□□□ -1.93
SKA1Q96BD8 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 MIR4658-201ENST00000584344 65 ntBASIC2.97□□□□□ -1.93
SKA1Q96BD8 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 CR381653.2-201ENST00000624041 768 ntBASIC2.97□□□□□ -1.93
SKA1Q96BD8 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
SKA1Q96BD8 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
SKA1Q96BD8 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.96□□□□□ -1.93
SKA1Q96BD8 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.96□□□□□ -1.93
SKA1Q96BD8 RBBP8P1-201ENST00000449447 1844 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.96□□□□□ -1.94
SKA1Q96BD8 RNU6-715P-201ENST00000365204 103 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 RNU6-487P-201ENST00000365430 104 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
SKA1Q96BD8 RNU5A-6P-201ENST00000384136 116 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 RNU6-1042P-201ENST00000384204 107 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 RNU2-63P-201ENST00000410792 194 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA1Q96BD8 AL096701.2-201ENST00000416920 238 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 CYCSP48-201ENST00000417124 323 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA1Q96BD8 AC073464.1-201ENST00000429823 534 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA1Q96BD8 AC008571.1-201ENST00000467232 300 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 RPS27AP9-201ENST00000477681 438 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 RPL7P43-201ENST00000478876 753 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 RPL9P33-201ENST00000484311 566 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 CKS1BP2-201ENST00000497342 240 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 AC079140.3-201ENST00000511111 550 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 AC105417.1-201ENST00000514691 285 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 LRRC34P2-201ENST00000514850 553 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 RNA5SP356-201ENST00000515972 94 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 RNU6-826P-201ENST00000516827 104 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.96□□□□□ -1.94
SKA1Q96BD8 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.96□□□□□ -1.94
SKA1Q96BD8 PIGPP4-201ENST00000584447 307 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 NBR2-204ENST00000587322 63 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 AC073539.2-201ENST00000597113 165 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 AC021646.1-201ENST00000605469 484 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 AC136475.10-201ENST00000620253 385 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 AC096644.4-201ENST00000563417 2912 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.96□□□□□ -1.94
SKA1Q96BD8 AL161431.1-201ENST00000618966 4205 ntBASIC2.96□□□□□ -1.94
SKA1Q96BD8 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
SKA1Q96BD8 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
SKA1Q96BD8 Y_RNA.296-201ENST00000364930 108 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 SNORA9.2-201ENST00000365361 133 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 SNORD116-20-201ENST00000384529 92 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 RNU6-607P-201ENST00000411283 108 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 HMGN2P35-201ENST00000412164 270 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.95□□□□□ -1.94
SKA1Q96BD8 AC003685.2-201ENST00000422795 395 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 AL139132.1-201ENST00000431587 344 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 AC105272.1-201ENST00000438604 198 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.95□□□□□ -1.94
SKA1Q96BD8 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.95□□□□□ -1.94
SKA1Q96BD8 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.95□□□□□ -1.94
SKA1Q96BD8 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.95□□□□□ -1.94
SKA1Q96BD8 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.95□□□□□ -1.94
SKA1Q96BD8 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
SKA1Q96BD8 AC117522.2-201ENST00000510049 657 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 PSMA3P-201ENST00000555485 635 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.95□□□□□ -1.94
SKA1Q96BD8 MIR3162-201ENST00000581818 82 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 MIR3611-201ENST00000584484 83 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.95□□□□□ -1.94
SKA1Q96BD8 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.95□□□□□ -1.94
SKA1Q96BD8 AC025449.1-201ENST00000603896 529 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 AL020991.1-201ENST00000612314 373 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 AC009509.4-201ENST00000619202 509 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 MIR5739-201ENST00000619803 80 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 AC005609.4-201ENST00000625071 447 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.95□□□□□ -1.94
SKA1Q96BD8 ZNF680P1-201ENST00000436625 1469 ntBASIC2.95□□□□□ -1.94
SKA1Q96BD8 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms