Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.14□□□□□ -1.59
SH3RF1Q7Z6J0 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SH3RF1Q7Z6J0 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
SH3RF1Q7Z6J0 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 ZNF204P-201ENST00000416749 2397 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 Y_RNA.217-201ENST00000364214 105 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 SNORA71.2-201ENST00000364941 134 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 SNORA70.4-201ENST00000365509 134 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 SNORD116-14-201ENST00000383894 92 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 SNORD116-17-201ENST00000383929 92 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 SNORD116-15-201ENST00000384445 92 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 SNORD116-20-201ENST00000384529 92 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 SNORD116-19-201ENST00000384729 92 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 MIR10B-201ENST00000385011 110 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 AL590383.1-201ENST00000428602 75 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 AC005042.3-201ENST00000453230 174 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 RPL23AP3-201ENST00000453844 468 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 Y_RNA.641-201ENST00000459414 105 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 AC005840.1-201ENST00000498412 377 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 AC108145.1-201ENST00000503770 153 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 SNORD116-25-201ENST00000516517 92 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 MIR3684-201ENST00000579779 74 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 MIR4444-1-201ENST00000581696 74 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 MIR4444-2-201ENST00000584390 74 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 AC091178.1-203ENST00000584586 279 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 AC004925.1-201ENST00000624256 2706 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 NOL8P1-201ENST00000508336 3529 ntBASIC5.13□□□□□ -1.59
SH3RF1Q7Z6J0 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 OR51H2P-202ENST00000641424 3046 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 RNU6-834P-201ENST00000362367 110 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 Y_RNA.71-201ENST00000362892 104 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 RNU6-137P-201ENST00000363680 108 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 SNORA72.2-201ENST00000365028 127 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 RNA5SP235-201ENST00000365411 114 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 RNU6-741P-201ENST00000383889 107 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 RNU6-281P-201ENST00000384212 103 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 MIR186-201ENST00000384988 86 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 HLFP1-201ENST00000402375 499 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 RN7SL542P-201ENST00000467147 294 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 RN7SL810P-201ENST00000493031 276 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 HMGB3P3-201ENST00000510526 400 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 RNA5SP272-201ENST00000516095 111 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 AP003730.1-201ENST00000524605 285 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 AL391261.3-201ENST00000557194 520 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 MIR4458-201ENST00000578872 75 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 AC112200.1-201ENST00000625015 234 ntBASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SH3RF1Q7Z6J0 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 Y_RNA.7-201ENST00000362352 102 ntBASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 RNU6-653P-201ENST00000363074 106 ntBASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 SNORA29-201ENST00000384183 140 ntBASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 U3.37-201ENST00000408528 213 ntBASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 RAB28P5-201ENST00000427490 651 ntBASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 AC009237.7-201ENST00000447357 229 ntBASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 UQCRHP4-201ENST00000471686 272 ntBASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 KC877373.1-201ENST00000479066 408 ntBASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 RPS4XP22-201ENST00000480755 780 ntBASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 AP004607.1-201ENST00000524456 203 ntBASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 AC233702.9-201ENST00000581528 203 ntBASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 AC053481.4-201ENST00000583164 216 ntBASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC5.11□□□□□ -1.59
SH3RF1Q7Z6J0 AC006272.2-201ENST00000594725 163 ntBASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms