Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AL160275.3-201ENST00000423876 471 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AL669831.1-202ENST00000428504 417 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AC236972.2-201ENST00000434979 310 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 GTF2IP13-201ENST00000438487 386 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 Y_RNA.632-201ENST00000459189 102 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 RPS20P22-201ENST00000473700 357 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AC104136.1-201ENST00000512969 394 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 RNU2-69P-201ENST00000516061 100 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AC064836.2-201ENST00000609491 462 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AC099778.2-201ENST00000610904 211 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AL049641.1-201ENST00000441055 1948 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 HSPA8P4-201ENST00000511877 1920 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 AC022336.2-201ENST00000568966 2538 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 RNU6-254P-201ENST00000363377 107 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 RNU6-288P-201ENST00000363690 104 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 RNU6-1227P-201ENST00000383981 107 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 MIR1302-11-201ENST00000408051 138 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 MIR1302-9-201ENST00000408365 138 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 MIR1302-10-201ENST00000408734 138 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 RPLP0P7-201ENST00000416050 667 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 RPL21P40-201ENST00000428586 483 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 RPL23AP83-201ENST00000434984 473 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 RPL37P4-201ENST00000448908 268 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 RPL37P6-201ENST00000460682 294 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 RNU6-1153P-201ENST00000516760 105 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 SNORA25.17-201ENST00000517184 124 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 POLR3GP2-201ENST00000588366 668 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 AL133255.1-201ENST00000606374 441 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 MIR1302-2-201ENST00000607096 138 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 MIR15A-201ENST00000607334 83 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 AC007318.2-201ENST00000620999 243 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 MIR622-201ENST00000638396 96 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 AC110774.1-201ENST00000623567 2018 ntBASIC3.66□□□□□ -1.82
VPS53Q5VIR6 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS53Q5VIR6 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.65□□□□□ -1.82
VPS53Q5VIR6 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
VPS53Q5VIR6 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
VPS53Q5VIR6 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
VPS53Q5VIR6 MIR548K-201ENST00000408406 116 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS53Q5VIR6 RN7SKP220-201ENST00000410611 288 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS53Q5VIR6 VN1R36P-201ENST00000414936 291 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS53Q5VIR6 AL354751.2-201ENST00000415471 210 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS53Q5VIR6 AC009969.1-201ENST00000438726 172 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS53Q5VIR6 SNORD19B-201ENST00000459623 84 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 AC092185.1-201ENST00000491371 97 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.65□□□□□ -1.83
VPS53Q5VIR6 SNORA14.1-201ENST00000516113 141 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 RN7SKP43-201ENST00000516173 320 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 RNU6-256P-201ENST00000516747 97 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 RNU6-1088P-201ENST00000516850 104 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.65□□□□□ -1.83
VPS53Q5VIR6 TRAV28-201ENST00000557548 323 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS53Q5VIR6 AC022418.1-201ENST00000624118 445 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.65□□□□□ -1.83
VPS53Q5VIR6 AL365361.1-201ENST00000566942 3481 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 AC103988.1-201ENST00000566382 2177 ntBASIC3.65□□□□□ -1.83
VPS53Q5VIR6 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 MAPK10-362ENST00000641864 4484 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
VPS53Q5VIR6 Y_RNA.315-201ENST00000365117 102 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 Y_RNA.534-201ENST00000384599 112 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 MIR325-201ENST00000385260 98 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 AL139039.1-201ENST00000401900 692 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 AL139397.2-201ENST00000404529 772 ntBASIC3.64□□□□□ -1.83
VPS53Q5VIR6 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms