Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.05□□□□□ -1.92
SOX2P48431 AL159987.2-201ENST00000432754 307 ntBASIC3.05□□□□□ -1.92
SOX2P48431 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.05□□□□□ -1.92
SOX2P48431 AC236972.1-201ENST00000433225 199 ntBASIC3.05□□□□□ -1.92
SOX2P48431 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.05□□□□□ -1.92
SOX2P48431 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SOX2P48431 BTF3P15-201ENST00000455606 336 ntBASIC3.05□□□□□ -1.92
SOX2P48431 MTCO3P10-201ENST00000455912 772 ntBASIC3.05□□□□□ -1.92
SOX2P48431 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.05□□□□□ -1.92
SOX2P48431 snoU109.2-201ENST00000459316 135 ntBASIC3.05□□□□□ -1.92
SOX2P48431 AC128713.1-201ENST00000471495 306 ntBASIC3.05□□□□□ -1.92
SOX2P48431 RPL32P34-201ENST00000486380 400 ntBASIC3.05□□□□□ -1.92
SOX2P48431 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.05□□□□□ -1.92
SOX2P48431 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.05□□□□□ -1.92
SOX2P48431 Y_RNA.670-201ENST00000516255 105 ntBASIC3.05□□□□□ -1.92
SOX2P48431 Y_RNA.687-201ENST00000516558 91 ntBASIC3.05□□□□□ -1.92
SOX2P48431 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.05□□□□□ -1.92
SOX2P48431 RNU6-1213P-201ENST00000517075 94 ntBASIC3.05□□□□□ -1.92
SOX2P48431 AC107934.2-201ENST00000518653 310 ntBASIC3.05□□□□□ -1.92
SOX2P48431 AP003072.1-201ENST00000531740 145 ntBASIC3.05□□□□□ -1.92
SOX2P48431 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.05□□□□□ -1.92
SOX2P48431 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.05□□□□□ -1.92
SOX2P48431 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.05□□□□□ -1.92
SOX2P48431 AC008962.1-201ENST00000605729 304 ntBASIC3.05□□□□□ -1.92
SOX2P48431 Y_RNA.812-201ENST00000610788 101 ntBASIC3.05□□□□□ -1.92
SOX2P48431 Y_RNA.784-201ENST00000613803 101 ntBASIC3.05□□□□□ -1.92
SOX2P48431 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.05□□□□□ -1.92
SOX2P48431 Y_RNA.787-201ENST00000616522 101 ntBASIC3.05□□□□□ -1.92
SOX2P48431 Y_RNA.780-201ENST00000617336 101 ntBASIC3.05□□□□□ -1.92
SOX2P48431 Y_RNA.801-201ENST00000619005 101 ntBASIC3.05□□□□□ -1.92
SOX2P48431 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.05□□□□□ -1.92
SOX2P48431 MIR7153-201ENST00000637758 57 ntBASIC3.05□□□□□ -1.92
SOX2P48431 AC119674.1-207ENST00000641355 633 ntBASIC3.05□□□□□ -1.92
SOX2P48431 MTND5P19-201ENST00000424872 1794 ntBASIC3.05□□□□□ -1.92
SOX2P48431 MTND4P27-201ENST00000450813 1354 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AC007496.3-201ENST00000624987 3443 ntBASIC3.04□□□□□ -1.92
SOX2P48431 ZNF826P-207ENST00000622273 1910 ntBASIC3.04□□□□□ -1.92
SOX2P48431 RNU1-75P-201ENST00000347264 129 ntBASIC3.04□□□□□ -1.92
SOX2P48431 RNU6-270P-201ENST00000364131 105 ntBASIC3.04□□□□□ -1.92
SOX2P48431 RNU6-827P-201ENST00000365553 106 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AC068538.1-201ENST00000376856 336 ntBASIC3.04□□□□□ -1.92
SOX2P48431 RNU6-72P-201ENST00000384285 79 ntBASIC3.04□□□□□ -1.92
SOX2P48431 RNU6-790P-201ENST00000384479 105 ntBASIC3.04□□□□□ -1.92
SOX2P48431 U3.37-201ENST00000408528 213 ntBASIC3.04□□□□□ -1.92
SOX2P48431 RN7SKP156-201ENST00000410308 342 ntBASIC3.04□□□□□ -1.92
SOX2P48431 RNA5SP31-201ENST00000411144 127 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.04□□□□□ -1.92
SOX2P48431 DBIP2-201ENST00000419076 262 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.04□□□□□ -1.92
SOX2P48431 RPL23AP82-202ENST00000427528 469 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.04□□□□□ -1.92
SOX2P48431 NOTCH2P1-201ENST00000443481 624 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AL118496.2-201ENST00000448300 230 ntBASIC3.04□□□□□ -1.92
SOX2P48431 RPL26P9-201ENST00000457466 433 ntBASIC3.04□□□□□ -1.92
SOX2P48431 HMGN1P18-201ENST00000457642 277 ntBASIC3.04□□□□□ -1.92
SOX2P48431 CENPBD1P1-201ENST00000464061 469 ntBASIC3.04□□□□□ -1.92
SOX2P48431 RPL7P42-201ENST00000481005 679 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AC097473.1-201ENST00000508142 408 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AC113155.1-201ENST00000511141 769 ntBASIC3.04□□□□□ -1.92
SOX2P48431 SNORA70.18-201ENST00000516696 98 ntBASIC3.04□□□□□ -1.92
SOX2P48431 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
SOX2P48431 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.04□□□□□ -1.92
SOX2P48431 NACAP3-201ENST00000552100 481 ntBASIC3.04□□□□□ -1.92
SOX2P48431 TRAV32-201ENST00000553993 340 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.04□□□□□ -1.92
SOX2P48431 HSPE1P7-201ENST00000604681 321 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AL590392.1-201ENST00000604960 446 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AL591516.1-201ENST00000611326 274 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AL731566.2-201ENST00000618971 317 ntBASIC3.04□□□□□ -1.92
SOX2P48431 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SOX2P48431 MTND5P7-201ENST00000413558 1798 ntBASIC3.04□□□□□ -1.92
SOX2P48431 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
SOX2P48431 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
SOX2P48431 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.04□□□□□ -1.92
SOX2P48431 AC007823.1-201ENST00000569932 1566 ntBASIC3.04□□□□□ -1.92
SOX2P48431 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
SOX2P48431 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
SOX2P48431 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.03□□□□□ -1.92
SOX2P48431 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.03□□□□□ -1.92
SOX2P48431 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SOX2P48431 Y_RNA.197-201ENST00000364004 102 ntBASIC3.03□□□□□ -1.92
SOX2P48431 RNU5E-7P-201ENST00000365290 117 ntBASIC3.03□□□□□ -1.92
SOX2P48431 Z98749.2-208ENST00000381646 500 ntBASIC3.03□□□□□ -1.92
SOX2P48431 Y_RNA.473-201ENST00000384333 102 ntBASIC3.03□□□□□ -1.92
SOX2P48431 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
SOX2P48431 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.03□□□□□ -1.92
SOX2P48431 RNU6-325P-201ENST00000411132 105 ntBASIC3.03□□□□□ -1.92
SOX2P48431 AL356968.1-201ENST00000416622 474 ntBASIC3.03□□□□□ -1.92
SOX2P48431 SYF2P2-201ENST00000417620 583 ntBASIC3.03□□□□□ -1.92
SOX2P48431 DAP3P1-201ENST00000441522 278 ntBASIC3.03□□□□□ -1.92
SOX2P48431 HIGD1AP2-201ENST00000446367 280 ntBASIC3.03□□□□□ -1.92
SOX2P48431 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.03□□□□□ -1.92
SOX2P48431 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.03□□□□□ -1.92
SOX2P48431 RPL23AP67-201ENST00000465341 474 ntBASIC3.03□□□□□ -1.92
SOX2P48431 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.03□□□□□ -1.92
SOX2P48431 MTND4LP22-201ENST00000508209 276 ntBASIC3.03□□□□□ -1.92
SOX2P48431 SCARNA15.1-201ENST00000516384 125 ntBASIC3.03□□□□□ -1.92
SOX2P48431 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SOX2P48431 AC007991.1-201ENST00000522680 631 ntBASIC3.03□□□□□ -1.92
SOX2P48431 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms