Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 CUL1P1-201ENST00000509510 2425 ntBASIC4.15□□□□□ -1.74
CCNFP41002 AC010615.1-201ENST00000594254 1764 ntBASIC4.15□□□□□ -1.74
CCNFP41002 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.15□□□□□ -1.74
CCNFP41002 RNA5SP366-201ENST00000365454 123 ntBASIC4.15□□□□□ -1.75
CCNFP41002 Y_RNA.358-201ENST00000365491 99 ntBASIC4.15□□□□□ -1.75
CCNFP41002 Y_RNA.376-201ENST00000365638 108 ntBASIC4.15□□□□□ -1.75
CCNFP41002 Y_RNA.405-201ENST00000383979 100 ntBASIC4.15□□□□□ -1.75
CCNFP41002 RNU6-217P-201ENST00000384164 104 ntBASIC4.15□□□□□ -1.75
CCNFP41002 Y_RNA.451-201ENST00000384200 100 ntBASIC4.15□□□□□ -1.75
CCNFP41002 Y_RNA.524-201ENST00000384564 100 ntBASIC4.15□□□□□ -1.75
CCNFP41002 Y_RNA.561-201ENST00000384694 100 ntBASIC4.15□□□□□ -1.75
CCNFP41002 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
CCNFP41002 MIR1183-201ENST00000408856 89 ntBASIC4.15□□□□□ -1.75
CCNFP41002 RPL23AP46-201ENST00000438548 490 ntBASIC4.15□□□□□ -1.75
CCNFP41002 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC4.15□□□□□ -1.75
CCNFP41002 RNU6-1132P-201ENST00000459214 107 ntBASIC4.15□□□□□ -1.75
CCNFP41002 RPS29P19-201ENST00000479709 171 ntBASIC4.15□□□□□ -1.75
CCNFP41002 RN7SL691P-201ENST00000494487 301 ntBASIC4.15□□□□□ -1.75
CCNFP41002 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC4.15□□□□□ -1.75
CCNFP41002 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.15□□□□□ -1.75
CCNFP41002 RNA5SP49-201ENST00000516450 115 ntBASIC4.15□□□□□ -1.75
CCNFP41002 RNU6-1183P-201ENST00000517054 60 ntBASIC4.15□□□□□ -1.75
CCNFP41002 AC091144.1-201ENST00000519573 138 ntBASIC4.15□□□□□ -1.75
CCNFP41002 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.15□□□□□ -1.75
CCNFP41002 PARP1P2-201ENST00000556806 195 ntBASIC4.15□□□□□ -1.75
CCNFP41002 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.15□□□□□ -1.75
CCNFP41002 DLEU2_2.2-201ENST00000615474 90 ntBASIC4.15□□□□□ -1.75
CCNFP41002 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.15□□□□□ -1.75
CCNFP41002 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.15□□□□□ -1.75
CCNFP41002 U6.104-201ENST00000637979 90 ntBASIC4.15□□□□□ -1.75
CCNFP41002 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.15□□□□□ -1.75
CCNFP41002 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
CCNFP41002 Z75746.1-201ENST00000440243 2080 ntBASIC4.15□□□□□ -1.75
CCNFP41002 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
CCNFP41002 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCNFP41002 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCNFP41002 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCNFP41002 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCNFP41002 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
CCNFP41002 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCNFP41002 Y_RNA.276-201ENST00000364732 109 ntBASIC4.14□□□□□ -1.75
CCNFP41002 Y_RNA.477-201ENST00000384352 108 ntBASIC4.14□□□□□ -1.75
CCNFP41002 MIR3074-201ENST00000384885 81 ntBASIC4.14□□□□□ -1.75
CCNFP41002 SNORA12.2-201ENST00000391040 156 ntBASIC4.14□□□□□ -1.75
CCNFP41002 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.14□□□□□ -1.75
CCNFP41002 MIR190B-201ENST00000401119 79 ntBASIC4.14□□□□□ -1.75
CCNFP41002 U3.37-201ENST00000408528 213 ntBASIC4.14□□□□□ -1.75
CCNFP41002 RNU2-38P-201ENST00000410856 79 ntBASIC4.14□□□□□ -1.75
CCNFP41002 RNA5SP31-201ENST00000411144 127 ntBASIC4.14□□□□□ -1.75
CCNFP41002 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCNFP41002 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.14□□□□□ -1.75
CCNFP41002 RNU6-911P-201ENST00000516523 104 ntBASIC4.14□□□□□ -1.75
CCNFP41002 Y_RNA.706-201ENST00000516933 99 ntBASIC4.14□□□□□ -1.75
CCNFP41002 TRAV8-5-201ENST00000537369 341 ntBASIC4.14□□□□□ -1.75
CCNFP41002 AC023157.2-201ENST00000540596 141 ntBASIC4.14□□□□□ -1.75
CCNFP41002 TVP23BP1-201ENST00000557500 617 ntBASIC4.14□□□□□ -1.75
CCNFP41002 LINC00933-203ENST00000559812 219 ntBASIC4.14□□□□□ -1.75
CCNFP41002 CYCSP39-201ENST00000565821 309 ntBASIC4.14□□□□□ -1.75
CCNFP41002 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.14□□□□□ -1.75
CCNFP41002 IPO5P1-202ENST00000600039 287 ntBASIC4.14□□□□□ -1.75
CCNFP41002 AC006077.1-201ENST00000604746 343 ntBASIC4.14□□□□□ -1.75
CCNFP41002 FTX_3.1-201ENST00000610451 147 ntBASIC4.14□□□□□ -1.75
CCNFP41002 AC004825.2-201ENST00000616634 455 ntBASIC4.14□□□□□ -1.75
CCNFP41002 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCNFP41002 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.14□□□□□ -1.75
CCNFP41002 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCNFP41002 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCNFP41002 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCNFP41002 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.14□□□□□ -1.75
CCNFP41002 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCNFP41002 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
CCNFP41002 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
CCNFP41002 AP001148.1-201ENST00000624124 2359 ntBASIC4.13□□□□□ -1.75
CCNFP41002 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCNFP41002 AC009541.1-201ENST00000438279 2662 ntBASIC4.13□□□□□ -1.75
CCNFP41002 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCNFP41002 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
CCNFP41002 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
CCNFP41002 RN7SKP280-201ENST00000364196 304 ntBASIC4.13□□□□□ -1.75
CCNFP41002 RNU1-132P-201ENST00000364300 164 ntBASIC4.13□□□□□ -1.75
CCNFP41002 Y_RNA.257-201ENST00000364596 102 ntBASIC4.13□□□□□ -1.75
CCNFP41002 Z98941.1-201ENST00000407764 100 ntBASIC4.13□□□□□ -1.75
CCNFP41002 RNA5SP36-201ENST00000410197 133 ntBASIC4.13□□□□□ -1.75
CCNFP41002 RN7SKP53-201ENST00000411337 315 ntBASIC4.13□□□□□ -1.75
CCNFP41002 RPL23AP26-201ENST00000412728 464 ntBASIC4.13□□□□□ -1.75
CCNFP41002 HMGN2P30-201ENST00000423237 256 ntBASIC4.13□□□□□ -1.75
CCNFP41002 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC4.13□□□□□ -1.75
CCNFP41002 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.13□□□□□ -1.75
CCNFP41002 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC4.13□□□□□ -1.75
CCNFP41002 AL132838.2-201ENST00000492041 314 ntBASIC4.13□□□□□ -1.75
CCNFP41002 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.13□□□□□ -1.75
CCNFP41002 RNU7-175P-201ENST00000515915 61 ntBASIC4.13□□□□□ -1.75
CCNFP41002 RNA5SP519-201ENST00000516480 119 ntBASIC4.13□□□□□ -1.75
CCNFP41002 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC4.13□□□□□ -1.75
CCNFP41002 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCNFP41002 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.13□□□□□ -1.75
CCNFP41002 AC114781.5-201ENST00000615297 108 ntBASIC4.13□□□□□ -1.75
CCNFP41002 AC011944.2-201ENST00000624440 683 ntBASIC4.13□□□□□ -1.75
CCNFP41002 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
CCNFP41002 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms