Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AMD1P1-201ENST00000457220 922 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 AC021146.2-201ENST00000504736 556 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC1.13□□□□□ -2.23
HLA-DMBP28068 MTCYBP43-201ENST00000513621 740 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 Y_RNA.675-201ENST00000516389 149 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 RNU6-572P-201ENST00000516724 80 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.13□□□□□ -2.23
HLA-DMBP28068 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
HLA-DMBP28068 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC1.13□□□□□ -2.23
HLA-DMBP28068 AL136520.1-202ENST00000555494 763 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 AL160236.1-201ENST00000556317 195 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.13□□□□□ -2.23
HLA-DMBP28068 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC1.13□□□□□ -2.23
HLA-DMBP28068 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.13□□□□□ -2.23
HLA-DMBP28068 AL358072.1-201ENST00000604156 575 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 AC018926.1-201ENST00000616335 435 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 AL132822.1-201ENST00000617063 513 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 AL512427.1-201ENST00000618593 349 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 U1.36-201ENST00000620684 176 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
HLA-DMBP28068 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
HLA-DMBP28068 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.13□□□□□ -2.23
HLA-DMBP28068 AL161722.3-201ENST00000605789 2983 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
HLA-DMBP28068 RNU6-1010P-201ENST00000362757 107 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 SNORD114-19-201ENST00000363072 75 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 RNU1-42P-201ENST00000364033 160 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 RNU6-338P-201ENST00000383888 105 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 RNU6-817P-201ENST00000391083 104 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 SNORA40C-201ENST00000391285 128 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 AC074117.2-201ENST00000417130 397 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 BTF3P4-201ENST00000418852 495 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 AL022400.1-201ENST00000423946 935 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 AL354695.1-201ENST00000427935 228 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 HSPE1P24-201ENST00000450782 238 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 BTF3P15-201ENST00000455606 336 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
HLA-DMBP28068 TPT1P8-201ENST00000510120 555 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 RNA5SP61-201ENST00000516453 100 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 AC109329.1-201ENST00000518744 317 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 AP004607.1-201ENST00000524456 203 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 AP005597.4-201ENST00000526762 229 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 AC015720.1-201ENST00000565251 277 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 AC103987.3-201ENST00000582071 292 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 CLIC4P2-201ENST00000601934 717 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 AC016925.2-201ENST00000605108 242 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 AC006270.3-201ENST00000605967 1036 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 AL512598.1-201ENST00000610158 273 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.12□□□□□ -2.23
HLA-DMBP28068 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.12□□□□□ -2.23
HLA-DMBP28068 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
HLA-DMBP28068 SNORA63.3-201ENST00000362682 132 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 RNU6-560P-201ENST00000364007 108 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 MIR517C-201ENST00000385103 95 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 FTH1P15-201ENST00000406984 280 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC007098.1-201ENST00000420122 367 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 MTCO3P46-201ENST00000425787 232 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC118469.1-201ENST00000442943 488 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC245102.2-201ENST00000448956 180 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 FO393415.2-201ENST00000480085 343 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 SNORA31.19-201ENST00000517079 126 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 AP000763.2-201ENST00000540641 163 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC093249.1-201ENST00000567049 203 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 MTND3P13-201ENST00000574391 343 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 BNIP3P9-201ENST00000603714 553 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC010900.2-201ENST00000604508 210 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC123767.1-202ENST00000620407 817 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 AC091965.5-201ENST00000624785 342 ntBASIC1.11□□□□□ -2.23
HLA-DMBP28068 AL136313.1-201ENST00000624804 202 ntBASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms