Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HMGB1P09429 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HMGB1P09429 RNU5A-6P-201ENST00000384136 116 ntBASIC3.64□□□□□ -1.83
HMGB1P09429 RNVU1-14-201ENST00000384770 164 ntBASIC3.64□□□□□ -1.83
HMGB1P09429 RNA5SP390-201ENST00000410191 113 ntBASIC3.64□□□□□ -1.83
HMGB1P09429 BMS1P22-201ENST00000414726 313 ntBASIC3.64□□□□□ -1.83
HMGB1P09429 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.64□□□□□ -1.83
HMGB1P09429 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.64□□□□□ -1.83
HMGB1P09429 AC117503.1-201ENST00000472241 394 ntBASIC3.64□□□□□ -1.83
HMGB1P09429 AP001893.2-201ENST00000526949 202 ntBASIC3.64□□□□□ -1.83
HMGB1P09429 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.64□□□□□ -1.83
HMGB1P09429 MIR3605-201ENST00000583214 100 ntBASIC3.64□□□□□ -1.83
HMGB1P09429 UBL5P2-201ENST00000583788 219 ntBASIC3.64□□□□□ -1.83
HMGB1P09429 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.64□□□□□ -1.83
HMGB1P09429 AC007792.1-201ENST00000623023 402 ntBASIC3.64□□□□□ -1.83
HMGB1P09429 AC022418.1-201ENST00000624118 445 ntBASIC3.64□□□□□ -1.83
HMGB1P09429 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.64□□□□□ -1.83
HMGB1P09429 AL035425.3-201ENST00000564206 4996 ntBASIC3.64□□□□□ -1.83
HMGB1P09429 ZNF271P-202ENST00000465539 1970 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.63□□□□□ -1.83
HMGB1P09429 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
HMGB1P09429 RNU6-655P-201ENST00000362858 107 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 SNORA51.4-201ENST00000364993 124 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 RNU1-148P-201ENST00000384472 162 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 DEFB108C-201ENST00000400154 252 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.63□□□□□ -1.83
HMGB1P09429 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.63□□□□□ -1.83
HMGB1P09429 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.63□□□□□ -1.83
HMGB1P09429 RN7SKP43-201ENST00000516173 320 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 RNA5SP367-201ENST00000516557 118 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 RNU6-586P-201ENST00000517265 104 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 MIR3126-201ENST00000577443 74 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 MIR1254-2-201ENST00000579553 63 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 AC245884.12-201ENST00000615364 59 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 Z69720.2-201ENST00000624755 279 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 MAPK10-266ENST00000641066 6555 ntBASIC3.63□□□□□ -1.83
HMGB1P09429 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
HMGB1P09429 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.62□□□□□ -1.83
HMGB1P09429 AL139276.1-201ENST00000311910 1001 ntBASIC3.62□□□□□ -1.83
HMGB1P09429 RNU6-1127P-201ENST00000384580 107 ntBASIC3.62□□□□□ -1.83
HMGB1P09429 RNU2-23P-201ENST00000410545 195 ntBASIC3.62□□□□□ -1.83
HMGB1P09429 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.62□□□□□ -1.83
HMGB1P09429 MTCYBP8-201ENST00000422855 651 ntBASIC3.62□□□□□ -1.83
HMGB1P09429 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.62□□□□□ -1.83
HMGB1P09429 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.62□□□□□ -1.83
HMGB1P09429 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.62□□□□□ -1.83
HMGB1P09429 AL356010.1-201ENST00000456364 102 ntBASIC3.62□□□□□ -1.83
HMGB1P09429 GMFBP1-201ENST00000467831 427 ntBASIC3.62□□□□□ -1.83
HMGB1P09429 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.62□□□□□ -1.83
HMGB1P09429 RN7SL20P-201ENST00000488827 297 ntBASIC3.62□□□□□ -1.83
HMGB1P09429 MTCYBP40-201ENST00000509390 1135 ntBASIC3.62□□□□□ -1.83
HMGB1P09429 RN7SKP219-201ENST00000516825 296 ntBASIC3.62□□□□□ -1.83
HMGB1P09429 AC118273.2-201ENST00000532092 465 ntBASIC3.62□□□□□ -1.83
HMGB1P09429 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.62□□□□□ -1.83
HMGB1P09429 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC3.62□□□□□ -1.83
HMGB1P09429 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.62□□□□□ -1.83
HMGB1P09429 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
HMGB1P09429 AC009509.4-201ENST00000619202 509 ntBASIC3.62□□□□□ -1.83
HMGB1P09429 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.62□□□□□ -1.83
HMGB1P09429 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.61□□□□□ -1.83
HMGB1P09429 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
HMGB1P09429 U3.13-201ENST00000364804 214 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 Y_RNA.381-201ENST00000365666 102 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 RNU1-138P-201ENST00000384093 164 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 MIR561-201ENST00000385216 97 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 SNORA16.2-201ENST00000390991 127 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 AL591034.2-201ENST00000402839 359 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 RNA5SP270-201ENST00000411361 118 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 USP9YP8-201ENST00000441913 500 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HMGB1P09429 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.61□□□□□ -1.83
HMGB1P09429 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.61□□□□□ -1.83
HMGB1P09429 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.61□□□□□ -1.83
HMGB1P09429 RNU6-377P-201ENST00000515965 102 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 RNU2-69P-201ENST00000516061 100 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.61□□□□□ -1.83
HMGB1P09429 MTND1P15-201ENST00000579262 949 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 YPEL5P2-201ENST00000605553 359 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 AC131280.1-202ENST00000624067 4211 ntBASIC3.61□□□□□ -1.83
HMGB1P09429 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
HMGB1P09429 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HMGB1P09429 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HMGB1P09429 RNU6-552P-201ENST00000362869 119 ntBASIC3.6□□□□□ -1.83
HMGB1P09429 RNU6-1042P-201ENST00000384204 107 ntBASIC3.6□□□□□ -1.83
HMGB1P09429 RNU6-517P-201ENST00000384362 110 ntBASIC3.6□□□□□ -1.83
HMGB1P09429 SNORD67-201ENST00000390833 111 ntBASIC3.6□□□□□ -1.83
HMGB1P09429 RNA5SP171-201ENST00000391071 115 ntBASIC3.6□□□□□ -1.83
HMGB1P09429 RNU6-903P-201ENST00000391270 109 ntBASIC3.6□□□□□ -1.83
HMGB1P09429 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.6□□□□□ -1.83
HMGB1P09429 RPL39P40-201ENST00000445481 146 ntBASIC3.6□□□□□ -1.83
HMGB1P09429 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.6□□□□□ -1.83
HMGB1P09429 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.6□□□□□ -1.83
HMGB1P09429 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
HMGB1P09429 AP005435.4-201ENST00000529514 284 ntBASIC3.6□□□□□ -1.83
HMGB1P09429 CYCSP26-201ENST00000534107 320 ntBASIC3.6□□□□□ -1.83
HMGB1P09429 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.6□□□□□ -1.83
HMGB1P09429 AC004223.2-201ENST00000590309 544 ntBASIC3.6□□□□□ -1.83
HMGB1P09429 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.6□□□□□ -1.83
HMGB1P09429 AL391646.1-201ENST00000603860 190 ntBASIC3.6□□□□□ -1.83
HMGB1P09429 AL161423.1-201ENST00000613700 262 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms