Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC0.62□□□□□ -2.31
TNFP01375 BNIP3P27-201ENST00000599991 412 ntBASIC0.62□□□□□ -2.31
TNFP01375 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC0.62□□□□□ -2.31
TNFP01375 NDUFA8P1-201ENST00000605525 367 ntBASIC0.62□□□□□ -2.31
TNFP01375 AC242628.1-201ENST00000606810 391 ntBASIC0.62□□□□□ -2.31
TNFP01375 AC011939.3-201ENST00000613686 466 ntBASIC0.62□□□□□ -2.31
TNFP01375 AC073569.3-201ENST00000619055 682 ntBASIC0.62□□□□□ -2.31
TNFP01375 AL159972.1-201ENST00000625150 448 ntBASIC0.62□□□□□ -2.31
TNFP01375 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
TNFP01375 RNU6-778P-201ENST00000363269 103 ntBASIC0.61□□□□□ -2.31
TNFP01375 RNU6-1235P-201ENST00000384559 107 ntBASIC0.61□□□□□ -2.31
TNFP01375 MIR525-201ENST00000384978 85 ntBASIC0.61□□□□□ -2.31
TNFP01375 AC127391.1-201ENST00000411737 98 ntBASIC0.61□□□□□ -2.31
TNFP01375 RPL26P27-201ENST00000414397 437 ntBASIC0.61□□□□□ -2.31
TNFP01375 POLR2J4-204ENST00000418424 324 ntBASIC0.61□□□□□ -2.31
TNFP01375 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC0.61□□□□□ -2.31
TNFP01375 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.61□□□□□ -2.31
TNFP01375 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC0.61□□□□□ -2.31
TNFP01375 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.61□□□□□ -2.31
TNFP01375 AC002381.1-201ENST00000447049 280 ntBASIC0.61□□□□□ -2.31
TNFP01375 HSPE1P13-201ENST00000451143 297 ntBASIC0.61□□□□□ -2.31
TNFP01375 RNU6-498P-201ENST00000459468 107 ntBASIC0.61□□□□□ -2.31
TNFP01375 AC112771.1-201ENST00000463581 102 ntBASIC0.61□□□□□ -2.31
TNFP01375 SCARNA16.2-201ENST00000516520 172 ntBASIC0.61□□□□□ -2.31
TNFP01375 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.61□□□□□ -2.31
TNFP01375 ARL2BPP5-201ENST00000523141 481 ntBASIC0.61□□□□□ -2.31
TNFP01375 MIR4661-201ENST00000582720 75 ntBASIC0.61□□□□□ -2.31
TNFP01375 AC002545.1-201ENST00000592511 181 ntBASIC0.61□□□□□ -2.31
TNFP01375 AP001429.1-201ENST00000602568 530 ntBASIC0.61□□□□□ -2.31
TNFP01375 AL021879.1-201ENST00000611756 288 ntBASIC0.61□□□□□ -2.31
TNFP01375 AC107075.1-201ENST00000613695 314 ntBASIC0.61□□□□□ -2.31
TNFP01375 AC013476.2-201ENST00000614456 459 ntBASIC0.61□□□□□ -2.31
TNFP01375 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC0.61□□□□□ -2.31
TNFP01375 AC099654.5-201ENST00000636479 350 ntBASIC0.61□□□□□ -2.31
TNFP01375 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.61□□□□□ -2.31
TNFP01375 AC119674.1-220ENST00000641502 1048 ntBASIC0.61□□□□□ -2.31
TNFP01375 RNA5SP347-201ENST00000362445 119 ntBASIC0.6□□□□□ -2.31
TNFP01375 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.6□□□□□ -2.31
TNFP01375 RNU6-968P-201ENST00000384076 107 ntBASIC0.6□□□□□ -2.31
TNFP01375 MIR100-201ENST00000385259 80 ntBASIC0.6□□□□□ -2.31
TNFP01375 USP9YP33-201ENST00000412220 421 ntBASIC0.6□□□□□ -2.31
TNFP01375 AC027119.1-201ENST00000440877 241 ntBASIC0.6□□□□□ -2.31
TNFP01375 RPL21P47-201ENST00000483696 477 ntBASIC0.6□□□□□ -2.31
TNFP01375 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC0.6□□□□□ -2.31
TNFP01375 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.6□□□□□ -2.31
TNFP01375 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.6□□□□□ -2.31
TNFP01375 SUB1P4-201ENST00000566062 339 ntBASIC0.6□□□□□ -2.31
TNFP01375 MIR3937-201ENST00000580135 106 ntBASIC0.6□□□□□ -2.31
TNFP01375 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC0.6□□□□□ -2.31
TNFP01375 AL357094.1-201ENST00000603845 844 ntBASIC0.6□□□□□ -2.31
TNFP01375 AL391646.1-201ENST00000603860 190 ntBASIC0.6□□□□□ -2.31
TNFP01375 AC008945.2-201ENST00000606056 604 ntBASIC0.6□□□□□ -2.31
TNFP01375 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC0.6□□□□□ -2.31
TNFP01375 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC0.6□□□□□ -2.31
TNFP01375 AC104820.1-201ENST00000624183 307 ntBASIC0.6□□□□□ -2.31
TNFP01375 U2.21-201ENST00000637295 81 ntBASIC0.6□□□□□ -2.31
TNFP01375 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.6□□□□□ -2.31
TNFP01375 RNU1-124P-201ENST00000363861 145 ntBASIC0.59□□□□□ -2.31
TNFP01375 RNU1-36P-201ENST00000365130 165 ntBASIC0.59□□□□□ -2.31
TNFP01375 RPL22P22-201ENST00000395439 379 ntBASIC0.59□□□□□ -2.31
TNFP01375 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.59□□□□□ -2.31
TNFP01375 AC006461.1-201ENST00000412637 326 ntBASIC0.59□□□□□ -2.31
TNFP01375 AL353621.1-201ENST00000418219 243 ntBASIC0.59□□□□□ -2.31
TNFP01375 AC013410.2-201ENST00000422627 201 ntBASIC0.59□□□□□ -2.31
TNFP01375 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.59□□□□□ -2.31
TNFP01375 MTND4LP16-201ENST00000440828 295 ntBASIC0.59□□□□□ -2.31
TNFP01375 PSMC1P5-201ENST00000512850 177 ntBASIC0.59□□□□□ -2.31
TNFP01375 RNU6-840P-201ENST00000517275 65 ntBASIC0.59□□□□□ -2.31
TNFP01375 COPS8P3-201ENST00000526024 482 ntBASIC0.59□□□□□ -2.31
TNFP01375 AC079598.5-201ENST00000547460 117 ntBASIC0.59□□□□□ -2.31
TNFP01375 SNORA77B-201ENST00000578179 125 ntBASIC0.59□□□□□ -2.31
TNFP01375 AC115989.2-201ENST00000578640 563 ntBASIC0.59□□□□□ -2.31
TNFP01375 AC004805.2-201ENST00000605382 482 ntBASIC0.59□□□□□ -2.31
TNFP01375 AC239868.4-201ENST00000608318 671 ntBASIC0.59□□□□□ -2.31
TNFP01375 MIR302D-201ENST00000362275 68 ntBASIC0.58□□□□□ -2.32
TNFP01375 RNU6-582P-201ENST00000362989 107 ntBASIC0.58□□□□□ -2.32
TNFP01375 RNU6-115P-201ENST00000364310 107 ntBASIC0.58□□□□□ -2.32
TNFP01375 RNU6-1164P-201ENST00000364428 107 ntBASIC0.58□□□□□ -2.32
TNFP01375 MIR936-201ENST00000401264 98 ntBASIC0.58□□□□□ -2.32
TNFP01375 RNU6-77P-201ENST00000410554 91 ntBASIC0.58□□□□□ -2.32
TNFP01375 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
TNFP01375 AC009518.2-201ENST00000418056 731 ntBASIC0.58□□□□□ -2.32
TNFP01375 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.58□□□□□ -2.32
TNFP01375 AL596276.1-201ENST00000434465 418 ntBASIC0.58□□□□□ -2.32
TNFP01375 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC0.58□□□□□ -2.32
TNFP01375 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
TNFP01375 PRELID3BP1-201ENST00000457142 540 ntBASIC0.58□□□□□ -2.32
TNFP01375 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.58□□□□□ -2.32
TNFP01375 MTCO1P31-201ENST00000506355 492 ntBASIC0.58□□□□□ -2.32
TNFP01375 RNU6-889P-201ENST00000517189 103 ntBASIC0.58□□□□□ -2.32
TNFP01375 NRON-201ENST00000517270 370 ntBASIC0.58□□□□□ -2.32
TNFP01375 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.58□□□□□ -2.32
TNFP01375 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC0.58□□□□□ -2.32
TNFP01375 CYP3A52P-201ENST00000563326 91 ntBASIC0.58□□□□□ -2.32
TNFP01375 MIR4653-201ENST00000585107 83 ntBASIC0.58□□□□□ -2.32
TNFP01375 AC087045.1-201ENST00000605856 382 ntBASIC0.58□□□□□ -2.32
TNFP01375 MIR8065-201ENST00000620577 100 ntBASIC0.58□□□□□ -2.32
TNFP01375 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.58□□□□□ -2.32
TNFP01375 MIR4275-201ENST00000636486 87 ntBASIC0.58□□□□□ -2.32
TNFP01375 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms