Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.41□□□□□ -1.86
VSX1Q9NZR4 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
VSX1Q9NZR4 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.4□□□□□ -1.86
VSX1Q9NZR4 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
VSX1Q9NZR4 AC002546.1-201ENST00000588041 2504 ntBASIC3.4□□□□□ -1.86
VSX1Q9NZR4 CUL1P1-201ENST00000509510 2425 ntBASIC3.4□□□□□ -1.86
VSX1Q9NZR4 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 Y_RNA.148-201ENST00000363557 117 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 Y_RNA.364-201ENST00000365532 101 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RNU6-842P-201ENST00000384269 107 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RNA5SP317-201ENST00000410176 116 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RNU6-985P-201ENST00000410182 104 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RNA5SP311-201ENST00000411290 116 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RN7SKP53-201ENST00000411337 315 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 EIF4EP2-201ENST00000422816 654 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RPL7P2-201ENST00000427639 268 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 HMGN2P16-201ENST00000456802 261 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RPL23AP45-201ENST00000476406 468 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 AL135752.1-201ENST00000479477 471 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RPL17P19-201ENST00000489069 552 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 Y_RNA.661-201ENST00000516003 99 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RNA5SP315-201ENST00000516340 116 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 SCARNA16.2-201ENST00000516520 172 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RNA5SP164-201ENST00000516533 110 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RNA5SP312-201ENST00000517068 116 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RNU6-699P-201ENST00000517081 110 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 LINC00933-203ENST00000559812 219 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 BNIP3P16-201ENST00000589779 534 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 AF117829.1-206ENST00000621883 3802 ntBASIC3.4□□□□□ -1.87
VSX1Q9NZR4 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
VSX1Q9NZR4 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 RNA5SP295-201ENST00000362655 121 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 RNU6-331P-201ENST00000384724 107 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 Y_RNA.577-201ENST00000384794 101 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 RNU6-308P-201ENST00000390957 107 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 MIR888-201ENST00000401186 77 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 PGBD4P6-201ENST00000421501 610 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 AC091390.1-201ENST00000433904 331 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 SNORA71B-202ENST00000439232 272 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 RPL37P4-201ENST00000448908 268 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 BTF3P15-201ENST00000455606 336 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 RAC1P2-201ENST00000511164 579 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 RNU6-377P-201ENST00000515965 102 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 RNA5SP384-201ENST00000516615 116 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 AC010186.2-204ENST00000537668 439 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 NACAP3-201ENST00000552100 481 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 AC010653.1-201ENST00000571108 881 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 AC009314.1-201ENST00000603871 304 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 AC123912.5-201ENST00000605470 343 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 MIR8076-201ENST00000611401 83 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 AL161629.2-201ENST00000615347 275 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 MIR6500-201ENST00000622700 86 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 U6.99-201ENST00000637524 83 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 SRP72P2-201ENST00000344851 1979 ntBASIC3.39□□□□□ -1.87
VSX1Q9NZR4 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.39□□□□□ -1.87
VSX1Q9NZR4 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 U8.8-201ENST00000365399 135 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 U3.42-201ENST00000408746 214 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 AL117339.3-201ENST00000418733 162 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.38□□□□□ -1.87
VSX1Q9NZR4 MTCYBP10-201ENST00000424905 650 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 AL159987.2-201ENST00000432754 307 ntBASIC3.38□□□□□ -1.87
VSX1Q9NZR4 AL031274.1-201ENST00000450334 232 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms