Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.21□□□□□ -1.9
CDT1Q9H211 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
CDT1Q9H211 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CDT1Q9H211 RNU4-66P-201ENST00000365199 138 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 RNU6-805P-201ENST00000365643 106 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CDT1Q9H211 U3.26-201ENST00000391236 204 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 SNORA48.8-201ENST00000391324 134 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 EI24P2-201ENST00000397776 1076 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 RNU6-1077P-201ENST00000410506 102 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 AL354751.2-201ENST00000415471 210 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 AC245054.2-201ENST00000415639 319 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.21□□□□□ -1.9
CDT1Q9H211 CALM2P2-201ENST00000428512 440 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 AL592045.1-201ENST00000429867 352 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.21□□□□□ -1.9
CDT1Q9H211 RPS24P13-201ENST00000442520 397 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.21□□□□□ -1.9
CDT1Q9H211 PRPS1P1-201ENST00000445305 876 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 SNRPFP3-201ENST00000457792 225 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 MTND4P17-201ENST00000470444 350 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.21□□□□□ -1.9
CDT1Q9H211 HMGN1P10-201ENST00000474557 553 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 RPL21P93-201ENST00000480465 489 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 AL160314.1-201ENST00000490836 438 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 RNU6-914P-201ENST00000516749 109 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 SNORD59.2-201ENST00000516873 68 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.21□□□□□ -1.9
CDT1Q9H211 RPL7P20-201ENST00000520308 745 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 AC087241.2-201ENST00000535801 324 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 AL670379.10-201ENST00000604330 253 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 AL137843.1-201ENST00000605078 385 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 AL670379.9-201ENST00000605428 253 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 AC099778.2-201ENST00000610904 211 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.21□□□□□ -1.9
CDT1Q9H211 AL137790.1-201ENST00000634283 177 ntBASIC3.21□□□□□ -1.9
CDT1Q9H211 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.21□□□□□ -1.9
CDT1Q9H211 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
CDT1Q9H211 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CDT1Q9H211 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CDT1Q9H211 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CDT1Q9H211 Y_RNA.138-201ENST00000363462 102 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 Y_RNA.301-201ENST00000364990 103 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 RNU6-741P-201ENST00000383889 107 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 AL139039.1-201ENST00000401900 692 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 AL356057.2-201ENST00000403318 432 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 AL606923.1-201ENST00000406616 190 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CDT1Q9H211 RNU2-33P-201ENST00000410344 192 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 RPS20P15-201ENST00000412792 311 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CDT1Q9H211 HMGB1P18-201ENST00000438801 619 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 AC107083.1-201ENST00000439643 279 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 AC125238.1-201ENST00000448842 249 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.2□□□□□ -1.9
CDT1Q9H211 RNA5SP310-201ENST00000459084 116 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 RN7SL633P-201ENST00000488974 297 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 AC083906.5-201ENST00000503722 328 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 AC097462.2-201ENST00000504623 481 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.2□□□□□ -1.9
CDT1Q9H211 FAM206BP-201ENST00000510179 541 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.2□□□□□ -1.9
CDT1Q9H211 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.2□□□□□ -1.9
CDT1Q9H211 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.2□□□□□ -1.9
CDT1Q9H211 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC3.2□□□□□ -1.9
CDT1Q9H211 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.2□□□□□ -1.9
CDT1Q9H211 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.2□□□□□ -1.9
CDT1Q9H211 Z99571.1-201ENST00000636677 394 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 MIR1302-1-201ENST00000637932 143 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 AC110774.1-201ENST00000623567 2018 ntBASIC3.2□□□□□ -1.9
CDT1Q9H211 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CDT1Q9H211 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
CDT1Q9H211 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
CDT1Q9H211 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.19□□□□□ -1.9
CDT1Q9H211 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.19□□□□□ -1.9
CDT1Q9H211 HSPA8P4-201ENST00000511877 1920 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.19□□□□□ -1.9
CDT1Q9H211 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CDT1Q9H211 SNORA4.3-201ENST00000365564 137 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CDT1Q9H211 Y_RNA.534-201ENST00000384599 112 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 RNU6-510P-201ENST00000391239 108 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.19□□□□□ -1.9
CDT1Q9H211 RNA5SP293-201ENST00000410527 113 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 RNU4-46P-201ENST00000410818 138 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 RNU4-14P-201ENST00000410858 122 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CDT1Q9H211 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.19□□□□□ -1.9
CDT1Q9H211 AC080125.1-201ENST00000414888 684 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 AL160275.3-201ENST00000423876 471 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 RPL21P40-201ENST00000428586 483 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 AL365400.1-201ENST00000431854 640 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.19□□□□□ -1.9
CDT1Q9H211 AC104058.1-201ENST00000448028 297 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.19□□□□□ -1.9
CDT1Q9H211 RNU7-66P-201ENST00000459469 62 ntBASIC3.19□□□□□ -1.9
CDT1Q9H211 RPL37P6-201ENST00000460682 294 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms