Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC0.41□□□□□ -2.34
USF3Q68DE3 SNORD116-28-201ENST00000516123 91 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 SCARNA15.2-201ENST00000516409 127 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AP003066.2-201ENST00000529375 555 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC0.41□□□□□ -2.34
USF3Q68DE3 SNRPGP17-201ENST00000603780 214 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AC016542.1-201ENST00000608259 493 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AC084824.5-201ENST00000612009 413 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AL159972.1-201ENST00000625150 448 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 U2.21-201ENST00000637295 81 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AC008163.1-202ENST00000636004 2889 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AC068700.1-201ENST00000565862 3754 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.41□□□□□ -2.34
USF3Q68DE3 RPL23AP32-201ENST00000395315 459 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AL355615.1-201ENST00000406187 641 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC0.41□□□□□ -2.34
USF3Q68DE3 AC092685.1-201ENST00000447960 1243 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC0.41□□□□□ -2.34
USF3Q68DE3 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.41□□□□□ -2.34
USF3Q68DE3 MRPS17P3-201ENST00000465453 385 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 LRRC34P2-201ENST00000514850 553 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AP003355.1-201ENST00000518956 587 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.41□□□□□ -2.34
USF3Q68DE3 AC087045.1-201ENST00000605856 382 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AC040168.1-201ENST00000623594 991 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 MTND4P12-201ENST00000498999 1377 ntBASIC0.4□□□□□ -2.34
USF3Q68DE3 RNU6-386P-201ENST00000362650 107 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 Y_RNA.255-201ENST00000364581 97 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 MIR561-201ENST00000385216 97 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 RNU6-272P-201ENST00000411028 104 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 RPL37P10-201ENST00000412884 288 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 AC007742.1-201ENST00000425789 329 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 ELOCP26-201ENST00000436067 329 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.4□□□□□ -2.35
USF3Q68DE3 ZNF705CP-201ENST00000530515 889 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC0.4□□□□□ -2.35
USF3Q68DE3 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
USF3Q68DE3 CYP4A27P-201ENST00000567218 190 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 AC136932.1-201ENST00000574771 208 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.4□□□□□ -2.35
USF3Q68DE3 AC073544.2-201ENST00000601155 540 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 AC023932.2-201ENST00000603176 175 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 AL512506.2-201ENST00000624472 458 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.4□□□□□ -2.35
USF3Q68DE3 Z75746.1-201ENST00000440243 2080 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 RNU6-288P-201ENST00000363690 104 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 RNU6-884P-201ENST00000363889 107 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 VTRNA1-3-201ENST00000365645 89 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 MIR608-201ENST00000384820 100 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 MIR649-201ENST00000384843 97 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 AL606490.4-201ENST00000423117 127 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 NDUFB4P7-201ENST00000423198 363 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC0.4□□□□□ -2.35
USF3Q68DE3 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.4□□□□□ -2.35
USF3Q68DE3 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.4□□□□□ -2.35
USF3Q68DE3 AC134050.1-201ENST00000495088 933 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 RNU6-496P-201ENST00000516145 99 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 AL359212.1-201ENST00000556608 614 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 AP000654.2-201ENST00000605633 586 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 AC009974.1-201ENST00000608881 455 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 AC017104.5-201ENST00000637647 639 ntBASIC0.4□□□□□ -2.35
USF3Q68DE3 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
USF3Q68DE3 Y_RNA.67-201ENST00000362870 100 ntBASIC0.39□□□□□ -2.35
USF3Q68DE3 MIR1267-201ENST00000408723 78 ntBASIC0.39□□□□□ -2.35
USF3Q68DE3 UBE2V2P3-201ENST00000433562 437 ntBASIC0.39□□□□□ -2.35
USF3Q68DE3 GTF2IP13-201ENST00000438487 386 ntBASIC0.39□□□□□ -2.35
USF3Q68DE3 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.39□□□□□ -2.35
USF3Q68DE3 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.39□□□□□ -2.35
USF3Q68DE3 AP1S2P1-201ENST00000457344 379 ntBASIC0.39□□□□□ -2.35
USF3Q68DE3 AC114982.1-201ENST00000469402 321 ntBASIC0.39□□□□□ -2.35
USF3Q68DE3 RPL36AP48-201ENST00000485521 314 ntBASIC0.39□□□□□ -2.35
USF3Q68DE3 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.39□□□□□ -2.35
USF3Q68DE3 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.39□□□□□ -2.35
USF3Q68DE3 CYB5AP5-201ENST00000549779 389 ntBASIC0.39□□□□□ -2.35
USF3Q68DE3 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC0.39□□□□□ -2.35
USF3Q68DE3 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.39□□□□□ -2.35
USF3Q68DE3 MTCYBP22-201ENST00000603788 447 ntBASIC0.39□□□□□ -2.35
USF3Q68DE3 AC011939.3-201ENST00000613686 466 ntBASIC0.39□□□□□ -2.35
USF3Q68DE3 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.39□□□□□ -2.35
USF3Q68DE3 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
USF3Q68DE3 MIR424-201ENST00000362227 98 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 RNU1-36P-201ENST00000365130 165 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
USF3Q68DE3 RNA5SP63-201ENST00000391225 112 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 FTH1P15-201ENST00000406984 280 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 MIR1302-8-201ENST00000408342 128 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 RNU2-47P-201ENST00000410649 186 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 AC010385.1-201ENST00000412374 256 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 NDUFS5P4-201ENST00000412983 318 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 CST2P1-201ENST00000425770 87 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 RAB11AP1-201ENST00000442978 646 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 PRPS1P1-201ENST00000445305 876 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 MTND1P33-201ENST00000446251 917 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 PTENP1-201ENST00000447117 1215 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.38□□□□□ -2.35
USF3Q68DE3 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
USF3Q68DE3 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.38□□□□□ -2.35
USF3Q68DE3 AC004812.1-201ENST00000540773 146 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 ADAM3B-201ENST00000569937 840 ntBASIC0.38□□□□□ -2.35
USF3Q68DE3 AC012676.2-201ENST00000619258 186 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms