Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 HMGB1P27-201ENST00000431429 603 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS53Q5VIR6 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS53Q5VIR6 HIGD1AP13-201ENST00000509878 289 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 RNU6-927P-201ENST00000516199 100 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 RNU6-1282P-201ENST00000516735 96 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 RNA5SP380-201ENST00000517190 98 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.7□□□□□ -1.82
VPS53Q5VIR6 AP000889.2-201ENST00000532684 490 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 HPRT1P3-201ENST00000539521 576 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.7□□□□□ -1.82
VPS53Q5VIR6 AL158032.1-201ENST00000605401 106 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS53Q5VIR6 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
VPS53Q5VIR6 AL133216.2-202ENST00000634512 349 ntBASIC3.7□□□□□ -1.82
VPS53Q5VIR6 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS53Q5VIR6 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS53Q5VIR6 AC093831.2-201ENST00000624393 3427 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AL079305.1-201ENST00000623159 3008 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 Y_RNA.58-201ENST00000362807 102 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 Y_RNA.67-201ENST00000362870 100 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 Y_RNA.154-201ENST00000363624 102 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 Y_RNA.212-201ENST00000364177 102 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 RNY3P1-201ENST00000365085 102 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 RNY3-201ENST00000365484 102 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 RNU6-741P-201ENST00000383889 107 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 Y_RNA.387-201ENST00000383918 102 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 Y_RNA.490-201ENST00000384413 102 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 MIR491-201ENST00000384877 84 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 SNORA16.2-201ENST00000390991 127 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 SNORD70.1-201ENST00000391007 85 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 CISD1P1-201ENST00000393907 327 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 RNA5SP111-201ENST00000411386 101 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 BX682237.1-201ENST00000415016 335 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AC092809.3-201ENST00000415453 231 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AL591212.2-201ENST00000433923 257 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AC007677.1-201ENST00000445757 515 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS53Q5VIR6 UQCRHP3-201ENST00000451503 251 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 RN7SL75P-201ENST00000461926 281 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS53Q5VIR6 RNA5SP291-201ENST00000517222 105 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS53Q5VIR6 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AP000763.2-201ENST00000540641 163 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AC090115.3-201ENST00000553218 849 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS53Q5VIR6 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS53Q5VIR6 U2.17-201ENST00000611454 95 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AC034102.8-201ENST00000615146 484 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 uc_338.15-201ENST00000615470 191 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AC099506.2-201ENST00000623074 221 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 SNORA50A-202ENST00000629536 136 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS53Q5VIR6 AC233263.6-201ENST00000631132 1963 ntBASIC3.69□□□□□ -1.82
VPS53Q5VIR6 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS53Q5VIR6 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AC007785.2-201ENST00000598627 1916 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS53Q5VIR6 SNORA14A-201ENST00000364773 135 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 RNU6-434P-201ENST00000384376 107 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 RNU6-393P-201ENST00000384475 107 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 RPS12P24-201ENST00000412619 387 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AC245054.2-201ENST00000415639 319 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AL512844.2-201ENST00000433990 593 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS53Q5VIR6 RNU7-167P-201ENST00000459160 62 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AC087588.1-201ENST00000462203 316 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 DYNLL1P5-201ENST00000467158 270 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AP002884.2-201ENST00000471647 395 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 RN7SL20P-201ENST00000488827 297 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AC010265.1-201ENST00000513509 211 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 ATP5F1P5-201ENST00000526403 760 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS53Q5VIR6 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AL442663.2-201ENST00000554385 511 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 ANP32BP3-201ENST00000559213 706 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS53Q5VIR6 MIR3941-201ENST00000582572 103 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 MIR3942-201ENST00000585264 109 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AC002545.1-201ENST00000592511 181 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AC022893.3-201ENST00000607665 437 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 AC107294.3-201ENST00000609211 526 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 ATP5A1P2-202ENST00000616464 443 ntBASIC3.68□□□□□ -1.82
VPS53Q5VIR6 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.68□□□□□ -1.82
VPS53Q5VIR6 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS53Q5VIR6 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS53Q5VIR6 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 RNU6-715P-201ENST00000365204 103 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 Y_RNA.339-201ENST00000365325 102 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 SNORD15B-201ENST00000384714 146 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 RNA5SP219-201ENST00000390940 113 ntBASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS53Q5VIR6 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms