Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AL360182.1-201ENST00000397433 468 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 PTMAP2-201ENST00000397627 327 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 RNU6-293P-201ENST00000411259 106 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 CYCSP19-201ENST00000411715 316 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 RPL37P10-201ENST00000412884 288 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 AL591419.1-201ENST00000427423 339 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.22□□□□□ -1.73
SF3A1Q15459 MTND1P17-201ENST00000448961 204 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 Y_RNA.635-201ENST00000459041 101 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 RNU6-1037P-201ENST00000459571 107 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 MED28P2-201ENST00000475771 317 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 MTND5P5-201ENST00000503764 376 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC4.22□□□□□ -1.73
SF3A1Q15459 Y_RNA.675-201ENST00000516389 149 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SF3A1Q15459 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.22□□□□□ -1.73
SF3A1Q15459 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.22□□□□□ -1.73
SF3A1Q15459 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.22□□□□□ -1.73
SF3A1Q15459 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SF3A1Q15459 AC097372.5-201ENST00000623665 376 ntBASIC4.22□□□□□ -1.73
SF3A1Q15459 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.21□□□□□ -1.73
SF3A1Q15459 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
SF3A1Q15459 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
SF3A1Q15459 RNU6-797P-201ENST00000363101 109 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 RNU6-283P-201ENST00000364788 107 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
SF3A1Q15459 AC006989.1-201ENST00000427212 131 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 MTND3P23-201ENST00000431980 347 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 AL591043.1-201ENST00000432461 424 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.21□□□□□ -1.74
SF3A1Q15459 RNU7-187P-201ENST00000458985 68 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 MTND4LP22-201ENST00000508209 276 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.21□□□□□ -1.74
SF3A1Q15459 RNU5F-8P-201ENST00000515941 111 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 RNU1-54P-201ENST00000517181 120 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.21□□□□□ -1.74
SF3A1Q15459 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.21□□□□□ -1.74
SF3A1Q15459 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC4.21□□□□□ -1.74
SF3A1Q15459 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC4.21□□□□□ -1.74
SF3A1Q15459 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.21□□□□□ -1.74
SF3A1Q15459 AC009163.5-201ENST00000575421 637 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.21□□□□□ -1.74
SF3A1Q15459 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.21□□□□□ -1.74
SF3A1Q15459 RNU1-30P-201ENST00000606575 163 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.21□□□□□ -1.74
SF3A1Q15459 MIR6128-201ENST00000615528 109 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 AL732372.2-225ENST00000642124 456 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 AC008669.1-201ENST00000565823 2178 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SF3A1Q15459 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SF3A1Q15459 MAPK10-322ENST00000641485 4530 ntBASIC4.21□□□□□ -1.74
SF3A1Q15459 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC4.2□□□□□ -1.74
SF3A1Q15459 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.2□□□□□ -1.74
SF3A1Q15459 RNU4-73P-201ENST00000363164 141 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
SF3A1Q15459 SNORA57.3-201ENST00000411095 141 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 AC009414.1-201ENST00000427200 443 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 RPS29P7-201ENST00000439662 171 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 AC124916.1-201ENST00000444020 547 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 AL358232.1-201ENST00000448030 501 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 AL441985.1-201ENST00000457727 251 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 snoU13.22-201ENST00000459428 104 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.2□□□□□ -1.74
SF3A1Q15459 RNU6ATAC13P-201ENST00000516152 131 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
SF3A1Q15459 TRAV32-201ENST00000553993 340 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 MIR4444-1-201ENST00000581696 74 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 MIR4444-2-201ENST00000584390 74 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.2□□□□□ -1.74
SF3A1Q15459 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.2□□□□□ -1.74
SF3A1Q15459 AC091152.3-201ENST00000604227 325 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 AC009233.1-201ENST00000616477 371 ntBASIC4.2□□□□□ -1.74
SF3A1Q15459 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SF3A1Q15459 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
SF3A1Q15459 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SF3A1Q15459 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SF3A1Q15459 MTND4P29-201ENST00000503122 1372 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 PWAR6-201ENST00000552334 4618 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
SF3A1Q15459 SNORD56.1-201ENST00000362913 68 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 RNU6-336P-201ENST00000364891 107 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 RNU6-790P-201ENST00000384479 105 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 RNU6-306P-201ENST00000384617 107 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.19□□□□□ -1.74
SF3A1Q15459 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC4.19□□□□□ -1.74
SF3A1Q15459 AL645568.3-201ENST00000433683 316 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 GZMAP1-201ENST00000503054 631 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4.19□□□□□ -1.74
SF3A1Q15459 MTCYBP40-201ENST00000509390 1135 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.19□□□□□ -1.74
SF3A1Q15459 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC4.19□□□□□ -1.74
SF3A1Q15459 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.19□□□□□ -1.74
SF3A1Q15459 MIR4738-201ENST00000579134 87 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 AL117336.2-201ENST00000602435 335 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 SNORA51-201ENST00000606420 132 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC4.19□□□□□ -1.74
SF3A1Q15459 MIR6075-201ENST00000620782 95 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 UCA1.1-201ENST00000620952 75 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 AC138627.2-201ENST00000624202 601 ntBASIC4.19□□□□□ -1.74
SF3A1Q15459 AP000553.6-201ENST00000641242 118 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms