Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 Y_RNA.453-201ENST00000384223 109 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 RNU6-220P-201ENST00000390919 107 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 RNU6-1158P-201ENST00000391167 107 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 AC114491.1-201ENST00000416095 246 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.76□□□□□ -1.97
HNF4AP41235 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.76□□□□□ -1.97
HNF4AP41235 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.76□□□□□ -1.97
HNF4AP41235 AL606489.2-201ENST00000433886 234 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 RPL7P54-201ENST00000438336 674 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.76□□□□□ -1.97
HNF4AP41235 MTND4P25-201ENST00000441039 533 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.76□□□□□ -1.97
HNF4AP41235 AC079781.2-201ENST00000446424 169 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 AC027673.1-201ENST00000456245 405 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 RPS29P26-201ENST00000477483 171 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 RPL39P36-201ENST00000490784 156 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.76□□□□□ -1.97
HNF4AP41235 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.76□□□□□ -1.97
HNF4AP41235 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.76□□□□□ -1.97
HNF4AP41235 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.76□□□□□ -1.97
HNF4AP41235 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.76□□□□□ -1.97
HNF4AP41235 RNU6-410P-201ENST00000517006 107 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 HPRT1P3-201ENST00000539521 576 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 AL157687.1-201ENST00000554853 619 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 AC009163.5-201ENST00000575421 637 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 AC007363.1-201ENST00000604736 620 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 HMGB1P24-202ENST00000615653 685 ntBASIC2.76□□□□□ -1.97
HNF4AP41235 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
HNF4AP41235 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.76□□□□□ -1.97
HNF4AP41235 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.76□□□□□ -1.97
HNF4AP41235 AC004944.1-201ENST00000517807 3059 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AL355596.1-201ENST00000565399 3996 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.75□□□□□ -1.97
HNF4AP41235 Y_RNA.38-201ENST00000362617 102 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 SNORA38-201ENST00000363946 132 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 Y_RNA.367-201ENST00000365544 101 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 MIR1277-201ENST00000408536 78 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 USP9YP27-201ENST00000418455 438 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.75□□□□□ -1.97
HNF4AP41235 SUMO1P4-201ENST00000429430 302 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AC000111.3-201ENST00000433478 193 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 MTCO2P3-201ENST00000442543 421 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 NFU1P2-201ENST00000448700 469 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 EEF1B2P7-201ENST00000451177 676 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 NIPA2P5-201ENST00000452282 464 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AC008571.1-201ENST00000467232 300 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 S100A11P2-201ENST00000467589 312 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 MTAPP1-201ENST00000489154 819 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AC069439.1-201ENST00000494739 167 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AC117522.3-201ENST00000507974 584 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 RNU7-51P-201ENST00000516560 62 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 SCARNA13-201ENST00000516672 275 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 SCARNA3-201ENST00000517097 143 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.75□□□□□ -1.97
HNF4AP41235 OR4R1P-201ENST00000529879 463 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 OR5BN1P-201ENST00000532955 829 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.75□□□□□ -1.97
HNF4AP41235 AL121821.2-201ENST00000556081 394 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 SNORA59B-202ENST00000578183 701 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.75□□□□□ -1.97
HNF4AP41235 MIR4658-201ENST00000584344 65 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AC005261.5-201ENST00000596280 355 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 BNIP3P9-201ENST00000603714 553 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AC005000.2-201ENST00000605468 310 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AC093788.1-201ENST00000609356 927 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 uc_338.14-201ENST00000613162 166 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AC093648.1-201ENST00000623546 606 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AC005609.4-201ENST00000625071 447 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.75□□□□□ -1.97
HNF4AP41235 AL137790.1-201ENST00000634283 177 ntBASIC2.75□□□□□ -1.97
HNF4AP41235 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
HNF4AP41235 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
HNF4AP41235 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.75□□□□□ -1.97
HNF4AP41235 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HNF4AP41235 MTND4P35-201ENST00000604257 1375 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.74□□□□□ -1.97
HNF4AP41235 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HNF4AP41235 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HNF4AP41235 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HNF4AP41235 RNU6-960P-201ENST00000364056 120 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 Y_RNA.390-201ENST00000383932 102 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 SNORA44-201ENST00000384584 132 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 RNU6-14P-201ENST00000384630 106 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 MIR483-201ENST00000385070 76 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 MIR147B-201ENST00000390185 80 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 AL591416.1-201ENST00000404015 867 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 USP9YP6-201ENST00000413550 854 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 AL096701.2-201ENST00000416920 238 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 PTGES3P4-201ENST00000426243 356 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 MED13P1-201ENST00000428342 171 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 HMGB3P12-201ENST00000438745 556 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HNF4AP41235 AC126389.1-201ENST00000477436 290 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 AC139453.3-201ENST00000493276 369 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.74□□□□□ -1.97
HNF4AP41235 SNORD27.1-201ENST00000516319 72 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 SNORA9.3-201ENST00000516383 129 ntBASIC2.74□□□□□ -1.97
HNF4AP41235 RNU6-1178P-201ENST00000516674 107 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms