Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.82□□□□□ -1.96
MSH3P20585 MIR6733-201ENST00000635723 61 ntBASIC2.82□□□□□ -1.96
MSH3P20585 Z99571.1-201ENST00000636677 394 ntBASIC2.82□□□□□ -1.96
MSH3P20585 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
MSH3P20585 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
MSH3P20585 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.81□□□□□ -1.96
MSH3P20585 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.81□□□□□ -1.96
MSH3P20585 RPL9P7-201ENST00000330965 580 ntBASIC2.81□□□□□ -1.96
MSH3P20585 Y_RNA.231-201ENST00000364358 102 ntBASIC2.81□□□□□ -1.96
MSH3P20585 Y_RNA.303-201ENST00000364998 94 ntBASIC2.81□□□□□ -1.96
MSH3P20585 CD24P4-201ENST00000382840 243 ntBASIC2.81□□□□□ -1.96
MSH3P20585 RNU6-1127P-201ENST00000384580 107 ntBASIC2.81□□□□□ -1.96
MSH3P20585 MIR181B1-201ENST00000385240 110 ntBASIC2.81□□□□□ -1.96
MSH3P20585 MT-TL1-201ENST00000386347 75 ntBASIC2.81□□□□□ -1.96
MSH3P20585 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
MSH3P20585 RPL21P75-201ENST00000396599 483 ntBASIC2.81□□□□□ -1.96
MSH3P20585 RPL21P28-201ENST00000401418 483 ntBASIC2.81□□□□□ -1.96
MSH3P20585 AL592114.1-201ENST00000403842 483 ntBASIC2.81□□□□□ -1.96
MSH3P20585 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.81□□□□□ -1.96
MSH3P20585 EEF1A1P40-201ENST00000412883 573 ntBASIC2.81□□□□□ -1.96
MSH3P20585 AC138393.2-201ENST00000414742 246 ntBASIC2.81□□□□□ -1.96
MSH3P20585 AL353572.1-201ENST00000442490 417 ntBASIC2.81□□□□□ -1.96
MSH3P20585 CECR9-201ENST00000453421 199 ntBASIC2.81□□□□□ -1.96
MSH3P20585 AC010099.1-201ENST00000455434 375 ntBASIC2.81□□□□□ -1.96
MSH3P20585 RPL21P39-201ENST00000463605 483 ntBASIC2.81□□□□□ -1.96
MSH3P20585 RPL21P93-201ENST00000480465 489 ntBASIC2.81□□□□□ -1.96
MSH3P20585 AC087190.1-201ENST00000484462 480 ntBASIC2.81□□□□□ -1.96
MSH3P20585 AC093591.1-201ENST00000491435 481 ntBASIC2.81□□□□□ -1.96
MSH3P20585 RPL21P16-201ENST00000495531 483 ntBASIC2.81□□□□□ -1.96
MSH3P20585 MTCYBP18-201ENST00000501056 747 ntBASIC2.81□□□□□ -1.96
MSH3P20585 AC009901.1-201ENST00000506703 541 ntBASIC2.81□□□□□ -1.96
MSH3P20585 CCDC34P1-201ENST00000507441 517 ntBASIC2.81□□□□□ -1.96
MSH3P20585 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.81□□□□□ -1.96
MSH3P20585 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.81□□□□□ -1.96
MSH3P20585 LRRC34P2-201ENST00000514850 553 ntBASIC2.81□□□□□ -1.96
MSH3P20585 RNU6-143P-201ENST00000516942 93 ntBASIC2.81□□□□□ -1.96
MSH3P20585 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.81□□□□□ -1.96
MSH3P20585 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.81□□□□□ -1.96
MSH3P20585 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.81□□□□□ -1.96
MSH3P20585 DNAJC8P1-201ENST00000554535 372 ntBASIC2.81□□□□□ -1.96
MSH3P20585 AL160281.1-201ENST00000605307 311 ntBASIC2.81□□□□□ -1.96
MSH3P20585 RNU6-89P-201ENST00000606519 100 ntBASIC2.81□□□□□ -1.96
MSH3P20585 AC107871.2-201ENST00000612894 502 ntBASIC2.81□□□□□ -1.96
MSH3P20585 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.81□□□□□ -1.96
MSH3P20585 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.81□□□□□ -1.96
MSH3P20585 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.81□□□□□ -1.96
MSH3P20585 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.81□□□□□ -1.96
MSH3P20585 AL512643.1-201ENST00000635735 524 ntBASIC2.81□□□□□ -1.96
MSH3P20585 CASC19-280ENST00000642102 1351 ntBASIC2.81□□□□□ -1.96
MSH3P20585 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
MSH3P20585 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
MSH3P20585 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
MSH3P20585 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
MSH3P20585 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.8□□□□□ -1.96
MSH3P20585 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
MSH3P20585 RNU6-371P-201ENST00000364283 108 ntBASIC2.8□□□□□ -1.96
MSH3P20585 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
MSH3P20585 MIR301A-201ENST00000385261 86 ntBASIC2.8□□□□□ -1.96
MSH3P20585 RNU6-332P-201ENST00000391193 108 ntBASIC2.8□□□□□ -1.96
MSH3P20585 AL139039.1-201ENST00000401900 692 ntBASIC2.8□□□□□ -1.96
MSH3P20585 AL669831.1-202ENST00000428504 417 ntBASIC2.8□□□□□ -1.96
MSH3P20585 SAR1AP4-201ENST00000429225 591 ntBASIC2.8□□□□□ -1.96
MSH3P20585 AL512844.2-201ENST00000433990 593 ntBASIC2.8□□□□□ -1.96
MSH3P20585 GTF2IP13-201ENST00000438487 386 ntBASIC2.8□□□□□ -1.96
MSH3P20585 RPL39P40-201ENST00000445481 146 ntBASIC2.8□□□□□ -1.96
MSH3P20585 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.8□□□□□ -1.96
MSH3P20585 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.8□□□□□ -1.96
MSH3P20585 SCARNA18-201ENST00000459004 134 ntBASIC2.8□□□□□ -1.96
MSH3P20585 TRBV1-201ENST00000476502 284 ntBASIC2.8□□□□□ -1.96
MSH3P20585 RPL21P99-201ENST00000480369 423 ntBASIC2.8□□□□□ -1.96
MSH3P20585 RPS15AP34-201ENST00000487776 387 ntBASIC2.8□□□□□ -1.96
MSH3P20585 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.8□□□□□ -1.96
MSH3P20585 RNU6-1315P-201ENST00000517187 99 ntBASIC2.8□□□□□ -1.96
MSH3P20585 AC078814.3-201ENST00000553036 491 ntBASIC2.8□□□□□ -1.96
MSH3P20585 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.8□□□□□ -1.96
MSH3P20585 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.8□□□□□ -1.96
MSH3P20585 MTCO3P13-201ENST00000577757 781 ntBASIC2.8□□□□□ -1.96
MSH3P20585 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
MSH3P20585 MIR1273C-201ENST00000578669 77 ntBASIC2.8□□□□□ -1.96
MSH3P20585 MIR548S-201ENST00000581352 82 ntBASIC2.8□□□□□ -1.96
MSH3P20585 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.8□□□□□ -1.96
MSH3P20585 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
MSH3P20585 AC091564.4-201ENST00000533934 2194 ntBASIC2.8□□□□□ -1.96
MSH3P20585 AC233263.6-201ENST00000631132 1963 ntBASIC2.8□□□□□ -1.96
MSH3P20585 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
MSH3P20585 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
MSH3P20585 Y_RNA.157-201ENST00000363638 102 ntBASIC2.79□□□□□ -1.96
MSH3P20585 RNU4-66P-201ENST00000365199 138 ntBASIC2.79□□□□□ -1.96
MSH3P20585 RNU6-715P-201ENST00000365204 103 ntBASIC2.79□□□□□ -1.96
MSH3P20585 RNU6-1027P-201ENST00000383998 107 ntBASIC2.79□□□□□ -1.96
MSH3P20585 RNU6-217P-201ENST00000384164 104 ntBASIC2.79□□□□□ -1.96
MSH3P20585 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH3P20585 AL645937.1-202ENST00000421799 937 ntBASIC2.79□□□□□ -1.96
MSH3P20585 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.79□□□□□ -1.96
MSH3P20585 COTL1P1-201ENST00000422309 375 ntBASIC2.79□□□□□ -1.96
MSH3P20585 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH3P20585 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH3P20585 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH3P20585 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH3P20585 ERLEC1P1-201ENST00000433806 578 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms