Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
LIG1P18858 AC025884.1-201ENST00000556034 378 ntBASIC4.64□□□□□ -1.67
LIG1P18858 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC4.64□□□□□ -1.67
LIG1P18858 AC012433.1-201ENST00000588916 398 ntBASIC4.64□□□□□ -1.67
LIG1P18858 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.64□□□□□ -1.67
LIG1P18858 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC4.64□□□□□ -1.67
LIG1P18858 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
LIG1P18858 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LIG1P18858 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
LIG1P18858 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
LIG1P18858 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LIG1P18858 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
LIG1P18858 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.63□□□□□ -1.67
LIG1P18858 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LIG1P18858 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIG1P18858 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIG1P18858 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIG1P18858 Y_RNA.33-201ENST00000362591 102 ntBASIC4.63□□□□□ -1.67
LIG1P18858 RNU6-212P-201ENST00000362642 104 ntBASIC4.63□□□□□ -1.67
LIG1P18858 RNU6-700P-201ENST00000391043 107 ntBASIC4.63□□□□□ -1.67
LIG1P18858 AP000567.1-201ENST00000406413 156 ntBASIC4.63□□□□□ -1.67
LIG1P18858 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC4.63□□□□□ -1.67
LIG1P18858 AC092423.1-201ENST00000430165 186 ntBASIC4.63□□□□□ -1.67
LIG1P18858 AC087650.1-201ENST00000431445 468 ntBASIC4.63□□□□□ -1.67
LIG1P18858 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.63□□□□□ -1.67
LIG1P18858 RPL23AP46-201ENST00000438548 490 ntBASIC4.63□□□□□ -1.67
LIG1P18858 GZMAP1-201ENST00000503054 631 ntBASIC4.63□□□□□ -1.67
LIG1P18858 RNA5SP471-201ENST00000516971 106 ntBASIC4.63□□□□□ -1.67
LIG1P18858 IGKV2-23-201ENST00000518729 323 ntBASIC4.63□□□□□ -1.67
LIG1P18858 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.63□□□□□ -1.67
LIG1P18858 RRN3P3-201ENST00000549207 578 ntBASIC4.63□□□□□ -1.67
LIG1P18858 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.63□□□□□ -1.67
LIG1P18858 AC022968.1-201ENST00000567372 442 ntBASIC4.63□□□□□ -1.67
LIG1P18858 AL591034.3-201ENST00000605511 685 ntBASIC4.63□□□□□ -1.67
LIG1P18858 AL391261.4-201ENST00000616012 481 ntBASIC4.63□□□□□ -1.67
LIG1P18858 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIG1P18858 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.63□□□□□ -1.67
LIG1P18858 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LIG1P18858 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIG1P18858 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
LIG1P18858 RNU6-512P-201ENST00000364438 103 ntBASIC4.62□□□□□ -1.67
LIG1P18858 RNA5SP479-201ENST00000364858 117 ntBASIC4.62□□□□□ -1.67
LIG1P18858 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.62□□□□□ -1.67
LIG1P18858 Y_RNA.416-201ENST00000384014 113 ntBASIC4.62□□□□□ -1.67
LIG1P18858 RNU1-89P-201ENST00000384592 164 ntBASIC4.62□□□□□ -1.67
LIG1P18858 RNU6-33P-201ENST00000384793 107 ntBASIC4.62□□□□□ -1.67
LIG1P18858 MIR628-201ENST00000385229 95 ntBASIC4.62□□□□□ -1.67
LIG1P18858 PTMAP5-201ENST00000393073 333 ntBASIC4.62□□□□□ -1.67
LIG1P18858 MIR548H3-201ENST00000408771 118 ntBASIC4.62□□□□□ -1.67
LIG1P18858 Y_RNA.592-201ENST00000410274 109 ntBASIC4.62□□□□□ -1.67
LIG1P18858 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.62□□□□□ -1.67
LIG1P18858 RPEP5-201ENST00000441137 268 ntBASIC4.62□□□□□ -1.67
LIG1P18858 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.62□□□□□ -1.67
LIG1P18858 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.62□□□□□ -1.67
LIG1P18858 HMGB1P35-201ENST00000503360 598 ntBASIC4.62□□□□□ -1.67
LIG1P18858 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LIG1P18858 RNU6-406P-201ENST00000516470 107 ntBASIC4.62□□□□□ -1.67
LIG1P18858 RNU6-182P-201ENST00000516970 105 ntBASIC4.62□□□□□ -1.67
LIG1P18858 AC022080.3-201ENST00000544433 482 ntBASIC4.62□□□□□ -1.67
LIG1P18858 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.62□□□□□ -1.67
LIG1P18858 AC136624.4-201ENST00000573044 370 ntBASIC4.62□□□□□ -1.67
LIG1P18858 AL355877.2-201ENST00000603670 358 ntBASIC4.62□□□□□ -1.67
LIG1P18858 AC098826.3-201ENST00000603823 466 ntBASIC4.62□□□□□ -1.67
LIG1P18858 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.62□□□□□ -1.67
LIG1P18858 ZYXP1-201ENST00000617638 118 ntBASIC4.62□□□□□ -1.67
LIG1P18858 MIR8059-201ENST00000620427 81 ntBASIC4.62□□□□□ -1.67
LIG1P18858 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
LIG1P18858 HSPA8P1-201ENST00000425843 1833 ntBASIC4.62□□□□□ -1.67
LIG1P18858 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
LIG1P18858 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LIG1P18858 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.62□□□□□ -1.67
LIG1P18858 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIG1P18858 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LIG1P18858 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.61□□□□□ -1.67
LIG1P18858 RNU1-76P-201ENST00000362903 159 ntBASIC4.61□□□□□ -1.67
LIG1P18858 RNA5SP322-201ENST00000363617 119 ntBASIC4.61□□□□□ -1.67
LIG1P18858 RNU6-1074P-201ENST00000383995 104 ntBASIC4.61□□□□□ -1.67
LIG1P18858 Y_RNA.555-201ENST00000384673 110 ntBASIC4.61□□□□□ -1.67
LIG1P18858 AL022722.2-201ENST00000402519 180 ntBASIC4.61□□□□□ -1.67
LIG1P18858 RNU6-121P-201ENST00000410525 99 ntBASIC4.61□□□□□ -1.67
LIG1P18858 MTCO1P39-201ENST00000426148 480 ntBASIC4.61□□□□□ -1.67
LIG1P18858 MTND5P15-201ENST00000434246 349 ntBASIC4.61□□□□□ -1.67
LIG1P18858 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.61□□□□□ -1.67
LIG1P18858 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.61□□□□□ -1.67
LIG1P18858 AC004383.1-201ENST00000438135 289 ntBASIC4.61□□□□□ -1.67
LIG1P18858 NUTF2P7-201ENST00000453086 375 ntBASIC4.61□□□□□ -1.67
LIG1P18858 HMGN2P16-201ENST00000456802 261 ntBASIC4.61□□□□□ -1.67
LIG1P18858 RNA5SP246-201ENST00000458909 119 ntBASIC4.61□□□□□ -1.67
LIG1P18858 PPIAP15-201ENST00000479662 484 ntBASIC4.61□□□□□ -1.67
LIG1P18858 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC4.61□□□□□ -1.67
LIG1P18858 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
LIG1P18858 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.61□□□□□ -1.67
LIG1P18858 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.61□□□□□ -1.67
LIG1P18858 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.61□□□□□ -1.67
LIG1P18858 RN7SL600P-201ENST00000581811 299 ntBASIC4.61□□□□□ -1.67
LIG1P18858 MIR8076-201ENST00000611401 83 ntBASIC4.61□□□□□ -1.67
LIG1P18858 MIR7151-201ENST00000617477 60 ntBASIC4.61□□□□□ -1.67
LIG1P18858 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.61□□□□□ -1.67
LIG1P18858 AC137590.2-201ENST00000619709 240 ntBASIC4.61□□□□□ -1.67
LIG1P18858 AC068724.3-201ENST00000625906 87 ntBASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms