Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PRR13P7-201ENST00000605538 430 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 AC245517.5-201ENST00000611529 162 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
COL3A1P02461 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.6□□□□□ -1.83
COL3A1P02461 AC093908.1-201ENST00000623125 8092 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
COL3A1P02461 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
COL3A1P02461 AC009902.3-201ENST00000606235 2172 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL3A1P02461 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
COL3A1P02461 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
COL3A1P02461 OR56A5-201ENST00000340110 738 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 Y_RNA.364-201ENST00000365532 101 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 RNU6-641P-201ENST00000384006 107 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 DSTNP4-201ENST00000399472 474 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 MIR1183-201ENST00000408856 89 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 RNU2-47P-201ENST00000410649 186 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 YWHAZP8-201ENST00000436935 731 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 RPL7P52-201ENST00000449200 742 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.6□□□□□ -1.83
COL3A1P02461 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.6□□□□□ -1.83
COL3A1P02461 CEACAMP4-201ENST00000457676 421 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.6□□□□□ -1.83
COL3A1P02461 MIR2053-201ENST00000459295 91 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 HMGB1P30-201ENST00000492455 606 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
COL3A1P02461 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.6□□□□□ -1.83
COL3A1P02461 RNU6-256P-201ENST00000516747 97 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.6□□□□□ -1.83
COL3A1P02461 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.6□□□□□ -1.83
COL3A1P02461 MIR4703-201ENST00000577728 79 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 AC005357.1-201ENST00000588399 301 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.6□□□□□ -1.83
COL3A1P02461 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.6□□□□□ -1.83
COL3A1P02461 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.6□□□□□ -1.83
COL3A1P02461 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.59□□□□□ -1.83
COL3A1P02461 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL3A1P02461 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.59□□□□□ -1.83
COL3A1P02461 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL3A1P02461 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL3A1P02461 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
COL3A1P02461 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.59□□□□□ -1.84
COL3A1P02461 RNU4-82P-201ENST00000362443 140 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 RNA5SP258-201ENST00000362750 119 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 RNU6-1252P-201ENST00000363054 104 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 DEFB109C-201ENST00000382575 264 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 DEFB109B-201ENST00000382656 264 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 RNU6-601P-201ENST00000384540 107 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 AL445529.1-201ENST00000398713 389 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 AL024474.1-201ENST00000404655 591 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.59□□□□□ -1.84
COL3A1P02461 ATG3P1-201ENST00000419507 911 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.59□□□□□ -1.84
COL3A1P02461 RPS26P56-201ENST00000444468 240 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 AL118520.1-201ENST00000450770 291 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 AC128713.1-201ENST00000471495 306 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 SRIP1-201ENST00000489235 288 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.59□□□□□ -1.84
COL3A1P02461 RNU7-51P-201ENST00000516560 62 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 RNU6-635P-201ENST00000516651 102 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 AC109329.2-201ENST00000519658 482 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.59□□□□□ -1.84
COL3A1P02461 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.84
COL3A1P02461 AL133271.1-201ENST00000538229 291 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.59□□□□□ -1.84
COL3A1P02461 AL118558.2-201ENST00000556294 238 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 MIR3605-201ENST00000583214 100 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.59□□□□□ -1.84
COL3A1P02461 AC113194.1-201ENST00000606037 500 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 AL355816.1-201ENST00000607951 118 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 AL365434.2-201ENST00000607979 234 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 AC006157.1-201ENST00000611750 366 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.59□□□□□ -1.84
COL3A1P02461 AC008264.2-201ENST00000610193 3731 ntBASIC3.59□□□□□ -1.84
COL3A1P02461 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL3A1P02461 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL3A1P02461 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.58□□□□□ -1.84
COL3A1P02461 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL3A1P02461 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL3A1P02461 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.58□□□□□ -1.84
COL3A1P02461 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL3A1P02461 RNU6-1115P-201ENST00000362490 106 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 RNU6-238P-201ENST00000363313 106 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 RNU5A-8P-201ENST00000364102 114 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 Y_RNA.252-201ENST00000364556 101 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 Y_RNA.257-201ENST00000364596 102 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 RNU6-593P-201ENST00000364716 112 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.58□□□□□ -1.84
COL3A1P02461 SET-203ENST00000372688 801 ntTSL 2 BASIC3.58□□□□□ -1.84
COL3A1P02461 SNORD116-11-201ENST00000383882 92 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 RNU6-310P-201ENST00000384655 107 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 Y_RNA.574-201ENST00000384766 95 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.58□□□□□ -1.84
COL3A1P02461 AC093151.1-201ENST00000427711 313 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.58□□□□□ -1.84
COL3A1P02461 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.58□□□□□ -1.84
COL3A1P02461 RPL12P25-201ENST00000455592 494 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 RPL7P43-201ENST00000478876 753 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms