Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC233263.6-201ENST00000631132 1963 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA3O43365 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXA3O43365 AP000560.1-201ENST00000624150 1937 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA3O43365 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA3O43365 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA3O43365 Y_RNA.19-201ENST00000362462 99 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 Y_RNA.26-201ENST00000362539 101 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 RNU6-942P-201ENST00000363002 107 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 RNU6-884P-201ENST00000363889 107 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 RNU6-806P-201ENST00000365147 105 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 RNA5SP151-201ENST00000365632 117 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 RNU6-472P-201ENST00000384299 107 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 RPL21P65-201ENST00000406094 466 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 MIR1302-6-201ENST00000408466 90 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 SNORA74C-2-201ENST00000411179 201 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 AP000275.1-201ENST00000411943 390 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 HMGN2P30-201ENST00000423237 256 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 RPL23AP46-201ENST00000438548 490 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 AC124916.1-201ENST00000444020 547 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA3O43365 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.41□□□□□ -1.86
HOXA3O43365 AC006026.2-201ENST00000457376 180 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 SNORA84-201ENST00000459229 133 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 AF213884.1-201ENST00000488102 463 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 RPL21P129-201ENST00000491732 478 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 AC108022.1-201ENST00000493466 478 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA3O43365 RNU7-175P-201ENST00000515915 61 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 RNU6-1143P-201ENST00000516125 104 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 RNA5SP73-201ENST00000516744 108 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 SNORA40.15-201ENST00000516884 107 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 AC090281.1-201ENST00000523019 276 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 AP004607.1-201ENST00000524456 203 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 AC007458.1-201ENST00000542812 373 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA3O43365 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA3O43365 AC104581.2-201ENST00000572227 430 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA3O43365 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 MIR6875-201ENST00000617506 72 ntBASIC3.41□□□□□ -1.86
HOXA3O43365 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA3O43365 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.41□□□□□ -1.86
HOXA3O43365 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA3O43365 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA3O43365 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA3O43365 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA3O43365 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.4□□□□□ -1.86
HOXA3O43365 AC022336.2-201ENST00000568966 2538 ntBASIC3.4□□□□□ -1.86
HOXA3O43365 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HOXA3O43365 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
HOXA3O43365 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
HOXA3O43365 RLIMP1-201ENST00000339626 1680 ntBASIC3.4□□□□□ -1.86
HOXA3O43365 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
HOXA3O43365 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.4□□□□□ -1.86
HOXA3O43365 OR56A5-201ENST00000340110 738 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 Y_RNA.376-201ENST00000365638 108 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 Y_RNA.461-201ENST00000384263 103 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 Y_RNA.471-201ENST00000384312 102 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 MIR93-201ENST00000385024 80 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 MT-TW-201ENST00000387382 68 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA3O43365 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA3O43365 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA3O43365 RN7SKP202-201ENST00000410439 330 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 YPEL5P1-201ENST00000419731 367 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA3O43365 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXA3O43365 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA3O43365 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXA3O43365 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXA3O43365 HMGB3P8-201ENST00000449709 577 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXA3O43365 RPL23AP14-201ENST00000468281 468 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 AC034236.1-201ENST00000469891 373 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 RN7SL132P-201ENST00000478131 296 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXA3O43365 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXA3O43365 RPL23AP49-201ENST00000492925 468 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXA3O43365 AC020593.1-201ENST00000507399 299 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXA3O43365 PPBPP1-201ENST00000510807 373 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 AC074250.1-201ENST00000511117 192 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 RNU6-388P-201ENST00000517012 105 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 RNU6-389P-201ENST00000517048 105 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 AC023632.4-201ENST00000517783 191 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
HOXA3O43365 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA3O43365 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA3O43365 AC060766.3-201ENST00000591442 263 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 AC020895.1-201ENST00000595362 272 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 AC012468.1-201ENST00000604888 430 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 AC097372.5-201ENST00000623665 376 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms