Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC012213.3-201ENST00000577199 777 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 MIR4299-201ENST00000577899 72 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AC243960.4-201ENST00000600532 288 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AL078603.1-201ENST00000603824 313 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AL161798.1-201ENST00000604630 131 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 RNU6-6P-201ENST00000606623 107 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AC007038.2-201ENST00000608095 740 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
USP42Q9H9J4 AC005296.1-201ENST00000616145 209 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AC024581.2-201ENST00000619986 252 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AC104985.3-201ENST00000623479 597 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.73□□□□□ -2.13
USP42Q9H9J4 U6.99-201ENST00000637524 83 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
USP42Q9H9J4 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
USP42Q9H9J4 RNU6-744P-201ENST00000365557 107 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 RNU6-1316P-201ENST00000384242 108 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC1.72□□□□□ -2.13
USP42Q9H9J4 TIMM9P2-201ENST00000419324 266 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 GTF2IP3-201ENST00000433887 494 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 AL353689.1-201ENST00000438895 199 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 SNRPGP13-201ENST00000442212 177 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 AC020550.1-201ENST00000447385 163 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC1.72□□□□□ -2.13
USP42Q9H9J4 CYP2C59P-201ENST00000457790 269 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 AC139453.3-201ENST00000493276 369 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 MTCO3P27-201ENST00000514397 196 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 RNA5SP220-201ENST00000516298 104 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.72□□□□□ -2.13
USP42Q9H9J4 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC1.72□□□□□ -2.13
USP42Q9H9J4 OR5AL2P-201ENST00000532185 920 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 AC093012.1-202ENST00000549403 582 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 AC126365.2-201ENST00000580630 379 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.72□□□□□ -2.13
USP42Q9H9J4 AP001269.3-201ENST00000588718 329 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 BNIP3P23-201ENST00000599655 511 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 MTATP6P2-201ENST00000603319 678 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 AC109809.1-201ENST00000619665 545 ntBASIC1.72□□□□□ -2.13
USP42Q9H9J4 RNU6-224P-201ENST00000384055 107 ntBASIC1.71□□□□□ -2.14
USP42Q9H9J4 AL133475.1-201ENST00000404414 305 ntBASIC1.71□□□□□ -2.14
USP42Q9H9J4 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.71□□□□□ -2.14
USP42Q9H9J4 RPS15AP9-201ENST00000439856 381 ntBASIC1.71□□□□□ -2.14
USP42Q9H9J4 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC1.71□□□□□ -2.14
USP42Q9H9J4 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.71□□□□□ -2.14
USP42Q9H9J4 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.71□□□□□ -2.14
USP42Q9H9J4 AC011005.2-201ENST00000487324 359 ntBASIC1.71□□□□□ -2.14
USP42Q9H9J4 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.71□□□□□ -2.14
USP42Q9H9J4 MTND2P31-201ENST00000512602 616 ntBASIC1.71□□□□□ -2.14
USP42Q9H9J4 AC060771.1-201ENST00000582031 164 ntBASIC1.71□□□□□ -2.14
USP42Q9H9J4 AC005034.5-201ENST00000604219 466 ntBASIC1.71□□□□□ -2.14
USP42Q9H9J4 AC080078.3-201ENST00000605407 463 ntBASIC1.71□□□□□ -2.14
USP42Q9H9J4 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.71□□□□□ -2.14
USP42Q9H9J4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
USP42Q9H9J4 NACAP2-201ENST00000318548 624 ntBASIC1.7□□□□□ -2.14
USP42Q9H9J4 RNU6-1280P-201ENST00000365211 107 ntBASIC1.7□□□□□ -2.14
USP42Q9H9J4 U8.14-201ENST00000390843 143 ntBASIC1.7□□□□□ -2.14
USP42Q9H9J4 SNORA40.6-201ENST00000391153 128 ntBASIC1.7□□□□□ -2.14
USP42Q9H9J4 HMGN2P39-201ENST00000398005 273 ntBASIC1.7□□□□□ -2.14
USP42Q9H9J4 RPS20P15-201ENST00000412792 311 ntBASIC1.7□□□□□ -2.14
USP42Q9H9J4 AL365400.1-201ENST00000431854 640 ntBASIC1.7□□□□□ -2.14
USP42Q9H9J4 AL161788.1-201ENST00000441805 169 ntBASIC1.7□□□□□ -2.14
USP42Q9H9J4 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.7□□□□□ -2.14
USP42Q9H9J4 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.7□□□□□ -2.14
USP42Q9H9J4 AC021451.1-201ENST00000523498 1129 ntBASIC1.7□□□□□ -2.14
USP42Q9H9J4 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC1.7□□□□□ -2.14
USP42Q9H9J4 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.7□□□□□ -2.14
USP42Q9H9J4 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.7□□□□□ -2.14
USP42Q9H9J4 AF129408.1-201ENST00000608767 431 ntBASIC1.7□□□□□ -2.14
USP42Q9H9J4 AC009974.1-201ENST00000608881 455 ntBASIC1.7□□□□□ -2.14
USP42Q9H9J4 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC1.7□□□□□ -2.14
USP42Q9H9J4 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.7□□□□□ -2.14
USP42Q9H9J4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
USP42Q9H9J4 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 RNU6-853P-201ENST00000364306 107 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
USP42Q9H9J4 RPL31P63-201ENST00000422565 375 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC104651.1-201ENST00000427559 735 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC1.69□□□□□ -2.14
USP42Q9H9J4 MTCO1P53-201ENST00000441633 699 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
USP42Q9H9J4 RPL23AP3-201ENST00000453844 468 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 MEMO1P3-201ENST00000459811 302 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 FO393415.2-201ENST00000480085 343 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC1.69□□□□□ -2.14
USP42Q9H9J4 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC1.69□□□□□ -2.14
USP42Q9H9J4 HMGB1P35-201ENST00000503360 598 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC1.69□□□□□ -2.14
USP42Q9H9J4 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC092436.3-201ENST00000511788 257 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC024589.1-201ENST00000512207 263 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC011604.1-201ENST00000545978 196 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.69□□□□□ -2.14
USP42Q9H9J4 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.69□□□□□ -2.14
USP42Q9H9J4 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC023158.2-201ENST00000614876 543 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC022709.1-201ENST00000615967 87 ntBASIC1.69□□□□□ -2.14
USP42Q9H9J4 AC112204.3-201ENST00000623822 332 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms