Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 U6.98-201ENST00000637157 84 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 AC032011.1-201ENST00000611703 1549 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 Y_RNA.33-201ENST00000362591 102 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 RNU6-270P-201ENST00000364131 105 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 RNU6-266P-201ENST00000364225 107 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 RNU6-395P-201ENST00000365662 106 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 SNORA48.7-201ENST00000391302 135 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 AC243428.1-201ENST00000421099 264 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 AC236972.1-201ENST00000433225 199 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 HMGN2P20-201ENST00000437531 273 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 MTND2P29-201ENST00000438595 412 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 RPL21P41-201ENST00000459863 264 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 AC104472.2-201ENST00000469035 601 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 AC117503.1-201ENST00000472241 394 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 RNA5SP143-201ENST00000516936 115 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 GNAI2P1-201ENST00000541815 315 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 AC034105.4-201ENST00000568304 277 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 MIR548AC-201ENST00000585049 88 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 MIR5684-201ENST00000585074 65 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 AC012603.1-201ENST00000606424 528 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 PISRT1.1-201ENST00000616930 107 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 U2.1-201ENST00000618978 145 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 SNORD39.4-201ENST00000620099 78 ntBASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.87□□□□□ -1.79
CLIP3Q96DZ5 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 AC091812.1-201ENST00000432235 1948 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 RNU6-99P-201ENST00000364721 107 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 SNORA62.3-201ENST00000365110 153 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 RNU6-1077P-201ENST00000410506 102 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 RNU6-1025P-201ENST00000410629 104 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 RPLP0P7-201ENST00000416050 667 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 ARL5AP4-201ENST00000430731 512 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 TBCAP3-201ENST00000512475 312 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 SNORA14.1-201ENST00000516113 141 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 RNA5SP384-201ENST00000516615 116 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 RNU1-45P-201ENST00000517191 141 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 AC106782.4-201ENST00000568264 210 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 MIR5692A1-201ENST00000580523 69 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 SNORD58B-201ENST00000607313 66 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 AC100812.1-201ENST00000607622 580 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 ATP5A1P2-202ENST00000616464 443 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 MIR7151-201ENST00000617477 60 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 XIST_intron.1-201ENST00000619444 68 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 AC078938.1-201ENST00000620993 318 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 AC073308.1-201ENST00000623696 305 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 MTND5P27-201ENST00000428871 1720 ntBASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CLIP3Q96DZ5 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 RNU6-371P-201ENST00000364283 108 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 RNU6-450P-201ENST00000364654 107 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 RNU6-715P-201ENST00000365204 103 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 Y_RNA.396-201ENST00000383949 103 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 RNU6-128P-201ENST00000383976 107 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 Y_RNA.485-201ENST00000384395 102 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 RNU6-95P-201ENST00000384697 107 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 SNORD70.1-201ENST00000391007 85 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 RNU6-823P-201ENST00000391042 103 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 MIR888-201ENST00000401186 77 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 RNU2-64P-201ENST00000411315 191 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 RPL23AP82-202ENST00000427528 469 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms