Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-CQ95604 AC098976.1-201ENST00000513014 541 ntBASIC5.13□□□□□ -1.59
HLA-CQ95604 AC015795.1-201ENST00000513669 327 ntBASIC5.13□□□□□ -1.59
HLA-CQ95604 RNA5SP272-201ENST00000516095 111 ntBASIC5.13□□□□□ -1.59
HLA-CQ95604 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.13□□□□□ -1.59
HLA-CQ95604 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-CQ95604 AC090616.3-201ENST00000582184 217 ntBASIC5.13□□□□□ -1.59
HLA-CQ95604 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC5.13□□□□□ -1.59
HLA-CQ95604 AL359198.2-201ENST00000611836 194 ntBASIC5.13□□□□□ -1.59
HLA-CQ95604 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC5.13□□□□□ -1.59
HLA-CQ95604 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
HLA-CQ95604 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
HLA-CQ95604 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.12□□□□□ -1.59
HLA-CQ95604 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC5.12□□□□□ -1.59
HLA-CQ95604 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-CQ95604 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-CQ95604 RNU6-818P-201ENST00000364837 108 ntBASIC5.12□□□□□ -1.59
HLA-CQ95604 Y_RNA.337-201ENST00000365312 102 ntBASIC5.12□□□□□ -1.59
HLA-CQ95604 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-CQ95604 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-CQ95604 RNU6ATAC19P-201ENST00000408096 110 ntBASIC5.12□□□□□ -1.59
HLA-CQ95604 GPS2P1-201ENST00000411761 986 ntBASIC5.12□□□□□ -1.59
HLA-CQ95604 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.12□□□□□ -1.59
HLA-CQ95604 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.12□□□□□ -1.59
HLA-CQ95604 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.12□□□□□ -1.59
HLA-CQ95604 AC020895.1-201ENST00000595362 272 ntBASIC5.12□□□□□ -1.59
HLA-CQ95604 ARF4P1-201ENST00000605447 541 ntBASIC5.12□□□□□ -1.59
HLA-CQ95604 TEX41-243ENST00000614173 190 ntTSL 5 BASIC5.12□□□□□ -1.59
HLA-CQ95604 MIR6715B-201ENST00000637172 77 ntBASIC5.12□□□□□ -1.59
HLA-CQ95604 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.12□□□□□ -1.59
HLA-CQ95604 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
HLA-CQ95604 AL359955.1-201ENST00000455242 3275 ntBASIC5.12□□□□□ -1.59
HLA-CQ95604 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-CQ95604 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
HLA-CQ95604 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-CQ95604 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.11□□□□□ -1.59
HLA-CQ95604 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-CQ95604 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-CQ95604 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
HLA-CQ95604 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HLA-CQ95604 RNU6-487P-201ENST00000365430 104 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 Y_RNA.563-201ENST00000384707 108 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 MIR670-201ENST00000390142 98 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 RPS26P8-201ENST00000393490 348 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 SNORA11.1-201ENST00000408133 129 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 RNA5SP475-201ENST00000410568 110 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 RPS20P14-201ENST00000412545 360 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-CQ95604 AP000705.1-201ENST00000454567 350 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC5.11□□□□□ -1.59
HLA-CQ95604 RPS4XP13-201ENST00000483219 789 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 SNORA25.12-201ENST00000516202 82 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 SNORA31.23-201ENST00000517219 133 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 AC022616.8-201ENST00000533569 253 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 AC012468.1-201ENST00000604888 430 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 AL139124.1-201ENST00000609123 421 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 AC008873.1-201ENST00000625051 138 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 MIR3529-201ENST00000637713 78 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-CQ95604 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-CQ95604 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-CQ95604 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.11□□□□□ -1.59
HLA-CQ95604 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
HLA-CQ95604 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-CQ95604 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HLA-CQ95604 ADAM3A-203ENST00000461344 2157 ntBASIC5.11□□□□□ -1.59
HLA-CQ95604 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-CQ95604 RNU6-199P-201ENST00000362954 107 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 RNU6-1285P-201ENST00000363480 105 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 RNA5SP223-201ENST00000365174 120 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 SNORA70.4-201ENST00000365509 134 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
HLA-CQ95604 RNU6-1056P-201ENST00000383996 107 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 SNORA36A-201ENST00000384221 132 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 U3.30-201ENST00000391308 210 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 RNA5SP390-201ENST00000410191 113 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 RN7SKP53-201ENST00000411337 315 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 NDUFS5P4-201ENST00000412983 318 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 RPS12P23-201ENST00000419579 400 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.1□□□□□ -1.59
HLA-CQ95604 RPL26P9-201ENST00000457466 433 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 snoU13.6-201ENST00000458785 104 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 RN7SL303P-201ENST00000469773 251 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-CQ95604 SNORA67.7-201ENST00000516664 135 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC5.1□□□□□ -1.59
HLA-CQ95604 AC006130.2-201ENST00000586202 326 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 AC022726.1-201ENST00000587475 207 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-CQ95604 AC114781.5-201ENST00000615297 108 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 AC006133.1-201ENST00000617106 264 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 BX005214.3-202ENST00000619809 325 ntBASIC5.1□□□□□ -1.59
HLA-CQ95604 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-CQ95604 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.1□□□□□ -1.59
HLA-CQ95604 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-CQ95604 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-CQ95604 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-CQ95604 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-CQ95604 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
HLA-CQ95604 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 207.4 ms